Evidence map›Paper›PMID 15550774›Full record

ArticleVirus genes2004

The TATGARAT box of the HSV-1 ICP27 gene is essential for immediate early expression but not critical for efficient replication in vitro or in vivo.

Aixu Sun, G V Devi-Rao, M K Rice, L W Gary, D C Bloom, R M Sandri-Goldin, P Wagner, E K Wager

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Aixu SunDepartment of Molecular Biology and Biochemistry and Center for Virus Research, University of California, California 92717, USA.
G V Devi-Rao
M K Rice
L W Gary
D C Bloom
R M Sandri-Goldin
P Wagner
E K Wager
University of California, Berkeley · USFlorida College · USUniversity of Florida · US

Funding

Herpes simplex virus gene regulationR37AI021515 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDRI-GOLDIN, ROZANNE M · 2002 to 2011
$3.8M
CONTROL OF VIRAL RNA SYNTHESIS IN HERPESVIRUS INFECTIONR01CA011861 · NCI · UNIVERSITY OF CALIFORNIA IRVINE · PI OSBORNE, TIMOTHY F · 1985 to 2005
$1.9M
DNA Microarrays for Neurotropic Human HerpesvirusesR01CA090287 · NCI · UNIVERSITY OF CALIFORNIA IRVINE · PI OSBORNE, TIMOTHY F · 2001 to 2004
$1.2M
HERPES SIMPLEX VIRUS GENE REGULATIONR01AI021515 · NIAID · UNIVERSITY OF CALIFORNIA IRVINE · PI SANDRI-GOLDIN, ROZANNE M. · 1985 to 2001
$557k
CONTROL OF VIRAL RNA SYNTHESIS IN HERPESVIRUS INFECTIONR37CA011861 · NCI · UNIVERSITY OF CALIFORNIA IRVINE · PI WAGNER, EDWARD K · 1988 to 1995
–
NCI NIH HHS CA11861NCI NIH HHS CA90287NIAID NIH HHS AI21515NIAID NIH HHS AI48699
6 · The paper itself

Abstract

We constructed a recombinant virus containing a promoter mutation altering the immediate-early expression of the HSV-1 ICP27 transcript, ICP27DeltaSma, which contains a deletion of the "TATGARAT" and surrounding sequences, but retains the rest of the ICP27 promoter. This mutant does not exhibit immediate-early expression of ICP27 using criteria of expression in the absence of de novo protein synthesis and earliest expression in the kinetic cascade. While transcript abundance at 1h after infection at 0.1 PFU/cell in mouse embryo fibroblasts was significantly altered compared to infections with wt -rescues, by 4 h after infection these differences were diminished or absent. Consistent with this observation, levels of some critical proteins were reduced in the mutant as compared to rescue infections at the earliest times tested, but were equivalent by 8-12 h pi. Further, both single and multi-step virus replication was equivalent with both mutants and rescues. Thus, altering the immediate early kinetics of ICP27 leads to a sub-optimal quantitative lag-phase in gene expression but without consequence to replication fitness in vitro . Infections in vivo also revealed the ability of mutant and rescue virus to invade the CNS of mice following footpad injections was equivalent. The nature of the role of immediate-early ICP27 expression is discussed in light of these observations.

Indexed as

Gene Expression Regulation, ViralPromoter Regions, GeneticAnimalsCell LineGene Expression ProfilingGenes, Immediate-EarlyHerpesvirus 1, HumanHumansImmediate-Early ProteinsMiceRNA, MessengerRNA, ViralSequence DeletionTranscription, GeneticViral Plaque AssayVirus ReplicationICP27 protein, human herpesvirus 1Immediate-Early ProteinsRNA, MessengerRNA, Viral

Identifiers

PMID15550774
OpenAlexW2074729319

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.