Evidence map›Paper›PMID 15547447›Full record

ArticleAlcoholism, clinical and experimental research2004

Glutathione S-transferase 8-8 expression is lower in alcohol-preferring than in alcohol-nonpreferring rats.

Tiebing Liang, Kirk Habegger, John P Spence, Tatiana Foroud, Julie A Ellison, Lawrence Lumeng, Ting-Kai Li, Lucinda G Carr

Open access · greenAbstract readComparative Study
In one paragraph

Article in Alcoholism, clinical and experimental research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Estrogen-Dependent Upregulation ofFrontiers in genetics · 2018
    Article
  6. Glutathione and redox signaling in substance abuse.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2014
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Candidate genes and their regulatory elements: alcohol preference and tolerance.Mammalian genome : official journal of the International Mammalian Genome Society · 2006
    Article
  13. New prospects and strategies for drug target discovery in neurodegenerative disorders.NeuroRx : the journal of the American Society for Experimental NeuroTherapeutics · 2005
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Tiebing LiangDepartment of Medicine, Indiana University School of Medicine, 975 W. Walnut Street, Indianapolis, IN 46202, USA.
Kirk Habegger
John P Spence
Tatiana Foroud
Julie A Ellison
Lawrence Lumeng
Ting-Kai Li
Lucinda G Carr
Indiana University – Purdue University Indianapolis · USIndiana University School of MedicineMarker Gene Technologies (United States) · USNational Institutes of Health · US

Funding

Translational Research and Science Education (OUT)P60AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DAVID A. KAREKEN · 2003 to 2026
$45.5M
RAT RESEARCH COMPONENTP50AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI CHRISTIAN, JOE C · 1987 to 2002
$5.3M
QTL MAPPING OF ALCOHOL PREFERENCE IN SELECTED RAT LINESR01AA010707 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI LIANG, TIEBING · 1995 to 2008
$2.8M
NIAAA NIH HHS AA00285NIAAA NIH HHS AA07611NIAAA NIH HHS AA10707NIAAA NIH HHS P50 AA007611NIAAA NIH HHS P60 AA007611NIAAA NIH HHS R01 AA010707
6 · The paper itself

Abstract

objectiveA primary focus of alcohol research is to provide novel targets for alcohol treatment by identifying genes that predispose individuals to drink alcohol. Animal models of alcoholism developed by selective breeding are invaluable tools to elucidate both the genetic nature and the underlying biological mechanisms that contribute to alcohol dependence. These selected lines (high alcohol preferring and low alcohol preferring) display phenotypic and genetic differences that can be studied to further our understanding of alcohol preference and related genetic traits. By combining molecular techniques, genetic and physiological factors that underlie the cause of alcoholism can be identified.

methodsTotal gene expression analysis was used to identify genes that are differentially expressed in specific brain regions between alcohol-naive, inbred alcohol-preferring (iP) and -nonpreferring (iNP) rats. Quantitative reverse transcriptase-polymerase chain reaction, in situ hybridization, Western blot, and sequence analysis were used to further characterize rat glutathione S-transferase 8-8 (rGST 8-8).

resultsLower expression of rGST 8-8 mRNA was observed in discrete brain regions of iP compared with iNP animals, and these expression differences were confirmed. To determine additional expression patterns of rGST 8-8, we used in situ hybridization. Rat GST 8-8 was highly expressed in hippocampus, the choroid plexus of the dorsal third ventricle and the lateral ventricle, and ependymal cells along the dorsal third ventricle and the third ventricle. Western blot analysis showed that rGST 8-8 protein levels were lower in the hippocampus and the amygdala of iP compared with iNP. A silent single-nucleotide polymorphism in the coding region and three single-nucleotide polymorphisms in the 3'-UTR were identified in the rGST 8-8 cDNA.

conclusionThere is regional variation of rGST 8-8 expression in the brain, at both the mRNA and protein level, and the iP strain has lower innate rGST 8-8 levels than the iNP strain in discrete brain regions.

Indexed as

Alcohol DrinkingAnimalsGene Expression Regulation, EnzymologicGlutathione TransferaseIsoenzymesMaleRatsSpecies SpecificityGlutathione TransferaseIsoenzymes

Identifiers

PMID15547447
PMCPMC4455766
OpenAlexW1991986127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.