Evidence map›Paper›PMID 15547285›Full record

ArticleJournal of bacteriology2004

Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands.

Zaini Mohd-Zain, Sarah L Turner, Ana M Cerdeño-Tárraga, Andrew K Lilley, Thomas J Inzana, A Jane Duncan, Rosalind M Harding, Derek W Hood, Timothy E Peto, Derrick W Crook

Abstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Emerging Resistance and Virulence Patterns inAntibiotics (Basel, Switzerland) · 2025
    Article
  6. Infections caused byClinical microbiology reviews · 2024
    Review
  7. Article
  8. Rapid dissemination of host metabolism-manipulating genes via integrative and conjugative elements.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Review
  10. Article
  11. Characterization and Fitness Cost of TnFrontiers in microbiology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Antibiotic Resistance Profiles ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2019
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Zaini Mohd-ZainInfectious Diseases and Clinical Microbiology, John Radcliffe Hospital, University of Oxford, Headington, Oxford, OX3 9DU, UK.
Sarah L Turner
Ana M Cerdeño-Tárraga
Andrew K Lilley
Thomas J Inzana
A Jane Duncan
Rosalind M Harding
Derek W Hood
Timothy E Peto
Derrick W Crook
John Radcliffe Hospital · GBUK Centre for Ecology & Hydrology · GBVirginia Tech · USUniversity of Oxford · GBWellcome Sanger Institute · GB

Funding

SEQUENCING OF THE HAEMOPHILUS DUCREYI GENOMER01AI045091 · NIAID · CHILDREN'S HOSPITAL (COLUMBUS) · PI MUNSON, ROBERT S. · 1999 to 1999
–
NIAID NIH HHS R01-AI45091Wellcome Trust
6 · The paper itself

Abstract

Transferable antibiotic resistance in Haemophilus influenzae was first detected in the early 1970s. After this, resistance spread rapidly worldwide and was shown to be transferred by a large 40- to 60-kb conjugative element. Bioinformatics analysis of the complete sequence of a typical H. influenzae conjugative resistance element, ICEHin1056, revealed the shared evolutionary origin of this element. ICEHin1056 has homology to 20 contiguous sequences in the National Center for Biotechnology Information database. Systematic comparison of these homologous sequences resulted in identification of a conserved syntenic genomic island consisting of up to 33 core genes in 16 beta- and gamma-Proteobacteria. These diverse genomic islands shared a common evolutionary origin, insert into tRNA genes, and have diverged widely, with G+C contents ranging from 40 to 70% and amino acid homologies as low as 20 to 25% for shared core genes. These core genes are likely to account for the conjugative transfer of the genomic islands and may even encode autonomous replication. Accessory gene clusters were nestled among the core genes and encode the following diverse major attributes: antibiotic, metal, and antiseptic resistance; degradation of chemicals; type IV secretion systems; two-component signaling systems; Vi antigen capsule synthesis; toxin production; and a wide range of metabolic functions. These related genomic islands include the following well-characterized structures: SPI-7, found in Salmonella enterica serovar Typhi; PAP1 or pKLC102, found in Pseudomonas aeruginosa; and the clc element, found in Pseudomonas sp. strain B13. This is the first report of a diverse family of related syntenic genomic islands with a deep evolutionary origin, and our findings challenge the view that genomic islands consist only of independently evolving modules.

Indexed as

Genomic IslandsBase SequenceBiological EvolutionComputational BiologyDrug Resistance, BacterialHaemophilus influenzaeMolecular Sequence DataPancreatitis-Associated ProteinsPhylogenyPancreatitis-Associated Proteins

Identifiers

PMID15547285
PMCPMC529066
OpenAlexW2133300547

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.