Evidence map›Paper›PMID 15545651›Full record

ArticleGenetics2005

Lig4 and rad54 are required for repair of DNA double-strand breaks induced by P-element excision in Drosophila.

Ron J Romeijn, Marcin M Gorski, Martijn A van Schie, Jasprina N Noordermeer, Leon H Mullenders, Wouter Ferro, Albert Pastink

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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  7. Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
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  14. ATP-dependent chromatin remodeling complexes in Drosophila.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2006
    Review
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ron J RomeijnDepartment of Toxicogenetics, Leiden University Medical Center (LUMC), 2333 AL, Leiden, The Netherlands.
Marcin M Gorski
Martijn A van Schie
Jasprina N Noordermeer
Leon H Mullenders
Wouter Ferro
Albert Pastink
Leiden University Medical Center · NLLoyola University Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Site-specific double-strand breaks (DSBs) were generated in the white gene located on the X chromosome of Drosophila by excision of the w(hd) P-element. To investigate the role of nonhomologous end joining (NHEJ) and homologous recombination (HR) in the repair of these breaks, the w(hd) P-element was mobilized in flies carrying mutant alleles of either lig4 or rad54. The survival of both lig4- and rad54-deficient males was reduced to 25% in comparison to the wild type, indicating that both NHEJ and HR are involved in the repair P-induced gaps in males. Survival of lig4-deficient females was not affected at all, implying that HR using the homologous chromosome as a template can partially compensate for the impaired NHEJ pathway. In rad54 mutant females survival was reduced to 70% after w(hd) excision. PCR analysis indicated that the undamaged homologous chromosome may compensate for the potential loss of the broken chromosome in rad54 mutant females after excision. Molecular analysis of the repair junctions revealed microhomology (2-8 bp)-dependent DSB repair in most products. In the absence of Lig4, the 8-bp target site duplication is used more frequently for repair. Our data indicate the presence of efficient alternative end-joining mechanisms, which partly depend on the presence of microhomology but do not require Lig4.

Indexed as

DNA DamageDNA RepairAllelesAnimalsCrosses, GeneticDNA-Binding ProteinsDNA HelicasesDNA LigasesDNA Transposable ElementsDrosophilaDrosophila ProteinsEgg ProteinsFemaleGene DeletionGenes, InsectInsect ProteinsDNA-Binding ProteinsDNA HelicasesDNA LigasesDNA Transposable ElementsDrosophila ProteinsEgg ProteinsInsect Proteinsokr protein, Drosophila

Identifiers

PMID15545651
PMCPMC1449100
OpenAlexW2111363311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.