Evidence map›Paper›PMID 15545648›Full record

ArticleGenetics2005

Genetic factors that regulate the attenuation of the general stress response of yeast.

Sohini Bose, James A Dutko, Richard S Zitomer

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Deletion of the Stress Response GeneJournal of fungi (Basel, Switzerland) · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The capacity ofFungal biology and biotechnology · 2014
    Article
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  12. Review
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  15. Review
  16. A combined expression-interaction model for inferring the temporal activity of transcription factors.Journal of computational biology : a journal of computational molecular cell biology · 2009
    Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sohini BoseDepartment of Biological Sciences, University at Albany/SUNY, New York 12222, USA.
James A Dutko
Richard S Zitomer
University at Albany, State University of New York · US

Funding

The Hypoxic and General Stress Responses in YeastR01GM026061 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI ZITOMER, RICHARD S · 1985 to 2004
$1.3M
NIGMS NIH HHS R01 GM026061-24
6 · The paper itself

Abstract

The general stress response of yeast involves the induction of approximately 200 genes in response to any one of several stresses. These genes are activated by Msn2 and repressed by the Srb10 kinase, a member of the mediator complex. Normally, Msn2 is exported from the nucleus, and Srb10 represses STRE gene expression. Under stress, Msn2 relocalizes to the nucleus and, with the relief of Srb10 repression, activates transcription. The stress response is rapid, but quickly attenuated. We show here that this attenuation is due to a nuclear-dependent degradation of Msn2. Msn2 rapidly disappeared from cells after heat or osmotic shock. This disappearance was not due to a change in MSN2 RNA levels, which remain constant during stress. Pulse-chase experiments confirmed the stress-dependent Msn2 degradation. The levels of Msn2 were significantly reduced in msn5 deletion cells that have been shown to constitutively retain Msn2 in the nucleus. The degradation was Srb10-dependent; Msn2 was not degraded in an srb10 deletion mutant. An Msn2 internal deletion mutant was insensitive to Srb10 repression, but was degraded by the Srb10-dependent mechanism. Thus, this mutation uncoupled Srb10 repression from degradation.

Indexed as

Cyclin-Dependent Kinase 8Cyclin-Dependent KinasesDNA-Binding ProteinsGene Expression Regulation, FungalGenotypeHot TemperatureKineticsPlasmidsRestriction MappingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsTranscription, GeneticCyclin-Dependent Kinase 8Cyclin-Dependent KinasesDNA-Binding ProteinsMSN2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSSN3 protein, S cerevisiaeTranscription Factors

Identifiers

PMID15545648
PMCPMC1449543
OpenAlexW2106414909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.