Evidence map›Paper›PMID 15545352›Full record

ArticleThe Journal of experimental medicine2004

Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte response.

Nicola A Jones, Xiping Wei, Darren R Flower, Mailee Wong, Franziska Michor, Michael S Saag, Beatrice H Hahn, Martin A Nowak, George M Shaw, Persephone Borrow

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of experimental medicine, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 216 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Revealing novel and conservative CD8Veterinary research · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Viruses · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. CD8Viral immunology · 2018
    Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Nicola A JonesViral Immunology Group, The Edward Jenner Institute for Vaccine Research, Compton, Newbury, Berkshire RG20 7NN, England, UK.
Xiping Wei
Darren R Flower
Mailee Wong
Franziska Michor
Michael S Saag
Beatrice H Hahn
Martin A Nowak
George M Shaw
Persephone Borrow
Jenner Institute · GBHarvard University · USHoward Hughes Medical Institute · USUniversity of Alabama at Birmingham · US

Funding

UAB AIEDRP: Immune Control and Escape in Acute InfectionU01AI041530 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KILBY, JOHN MICHAEL · 1997 to 2006
$7.0M
NIAID NIH HHS AI37340NIAID NIH HHS AI 41530NIAID NIH HHS U01 AI041530
6 · The paper itself

Abstract

CD8+ cytotoxic T lymphocytes (CTLs) play an important role in containment of virus replication in primary human immunodeficiency virus (HIV) infection. HIV's ability to mutate to escape from CTL pressure is increasingly recognized; but comprehensive studies of escape from the CD8 T cell response in primary HIV infection are currently lacking. Here, we have fully characterized the primary CTL response to autologous virus Env, Gag, and Tat proteins in three patients, and investigated the extent, kinetics, and mechanisms of viral escape from epitope-specific components of the response. In all three individuals, we observed variation beginning within weeks of infection at epitope-containing sites in the viral quasispecies, which conferred escape by mechanisms including altered peptide presentation/recognition and altered antigen processing. The number of epitope-containing regions exhibiting evidence of early CTL escape ranged from 1 out of 21 in a subject who controlled viral replication effectively to 5 out of 7 in a subject who did not. Evaluation of the extent and kinetics of HIV-1 escape from >40 different epitope-specific CD8 T cell responses enabled analysis of factors determining escape and suggested that escape is restricted by costs to intrinsic viral fitness and by broad, codominant distribution of CTL-mediated pressure on viral replication.

Indexed as

Antigen PresentationAmino Acid SequenceChromium RadioisotopesDNA PrimersEpitopes, T-LymphocyteGenes, gagGenes, tatHIV-1HIV Envelope Protein gp160HIV InfectionsHumansInterferon-gammaMolecular Sequence DataMutationPolymerase Chain ReactionSequence Analysis, DNAChromium RadioisotopesDNA PrimersEpitopes, T-LymphocyteHIV Envelope Protein gp160Interferon-gamma

Identifiers

PMID15545352
PMCPMC2211924
OpenAlexW2166374206

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.