Evidence map›Paper›PMID 15543947›Full record

ArticleMolecular and cellular biochemistry2004

The p50-p50 NF-kappaB complex as a stimulus-specific repressor of gene activation.

Xin Tong, Lei Yin, Raymond Washington, Daniel W Rosenberg, Charles Giardina

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular and cellular biochemistry, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 78 citations in OpenAlex.

  1. Oxidative medicine and cellular longevity · 2022
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  11. Immature Lymphocytes InhibitJournal of immunology (Baltimore, Md. : 1950) · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xin TongDepartment of Molecular & Cell Biology, University of Connecticut, Storrs, CT 06269, USA.
Lei Yin
Raymond Washington
Daniel W Rosenberg
Charles Giardina
University of Connecticut · US

Funding

MOLECULAR CHARACTERIZATION OF ACF (ABERRANT CRYPT FOCI)R01CA081428 · NCI · UNIVERSITY OF CONNECTICUT STORRS · PI ROSENBERG, DANIEL WILLIAM · 1999 to 2008
$2.0M
COLON CANCER CHEMOPREVENTIVE AGENTS AND APOPTOSISR29CA079656 · NCI · UNIVERSITY OF CONNECTICUT STORRS · PI GIARDINA, CHARLES A · 1999 to 2003
$389k
NCI NIH HHS R01CA81428NCI NIH HHS R29CA79656
6 · The paper itself

Abstract

The transcription factor NF-kappaB can be activated in different forms, including transcriptional activating and repressing forms. Intestinal epithelial cells have been found to modulate the relative levels of the p65-p50 and p50-p50 NF-kappaB complexes in a number of instances, and here we show that this ratio was altered in response to dietary fiber (wheat bran) and carcinogen exposure (azoxymethane). The influence of these complexes on gene regulation was examined in more detail in cell culture models. The colon-derived HT-29 cell line likewise activated both p65-p50 and p50-p50 NF-kappaB complexes: TNF-alpha triggered a strong, sustained p65-p50 activation with lower relative levels of p50-p50, whereas IL-1beta transiently activated p65-p50 with higher relative levels of p50-p50. Transfection experiments with an NF-kappaB reporter plasmid indicated that p50 was a repressor in HT-29 cells. Increased expression of the p50-p50 dimer by an adenovirus showed that the p50-p50 dimer suppressed IL-1beta activation of endogenous genes more than 5-fold (TNF-alpha, Cox-2 and IL-8), whereas gene activation by TNF-alpha was not significantly affected. DNA binding analyses showed a number of strong p50-p50 binding sites on these promoters. The selective p50-p50 suppression of IL-1beta gene activation corresponded to the transient nature of p65-p50 activation induced by IL-1beta (in both HT-29 and Caco-2 cells). Our findings demonstrate a novel gene regulatory mechanism for the NF-kappaB p50-p50 complex: a signal-specific transcriptional repression that appears to selectively inhibit stimuli that transiently activate p65-p50 complexes.

Indexed as

AdenoviridaeAnimal FeedAnimalsCaco-2 CellsCell LineColonColonic NeoplasmsDietary FiberDNAEpithelial CellsFemaleHumansImmunoblottingImmunohistochemistryInterleukin-1Intestinal MucosaDietary FiberDNAInterleukin-1LuciferasesNF-kappa BNF-kappa B p50 SubunitNFKB1 protein, humanNfkb1 protein, mouseRibonucleasesTranscription Factor RelATranscription FactorsTumor Necrosis Factor-alpha

Identifiers

PMID15543947
OpenAlexW2079307376

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.