Evidence map›Paper›PMID 15532013›Full record

ArticleAmerican journal of human genetics2005

Malic enzyme 2 may underlie susceptibility to adolescent-onset idiopathic generalized epilepsy.

David A Greenberg, Eftihia Cayanis, Lisa Strug, Sudhir Marathe, Martina Durner, Deb K Pal, Gabriele B Alvin, Irene Klotz, Elisa Dicker, Shlomo Shinnar and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
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  12. Genetic epilepsy syndromes without structural brain abnormalities: clinical features and experimental models.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2014
    Review
  13. A Pilot Study for Discovering Candidate Genes of Chromosome 18q21 in Methamphetamine Abusers: Case-control Association Study.Clinical psychopharmacology and neuroscience : the official scientific journal of the Korean College of Neuropsychopharmacology · 2014
    Article
  14. Article
  15. Review
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

David A GreenbergDivision of Statistical Genetics, Department of Psychiatry, and Columbia University Genome Center, Columbia University, 722 West 168th Street, New York, NY 10032, USA. dag2005@columbia.edu
Eftihia Cayanis
Lisa Strug
Sudhir Marathe
Martina Durner
Deb K Pal
Gabriele B Alvin
Irene Klotz
Elisa Dicker
Shlomo Shinnar
Edward B Bromfield
Stanley Resor
Jeffrey Cohen
Solomon L Moshe
Cynthia Harden
Harriet Kang
Columbia University · USMontefiore Medical Center · USAlbert Einstein College of Medicine · USCornell University · USHarvard University · US

Funding

RESOLVING HETEROGENEITY IN EPILEPSY WITH GENETIC MARKERSR01NS027941 · NINDS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GREENBERG, DAVID A. · 1990 to 2010
$9.0M
SEARCH FOR GENES INFLUENCING CHILDHOOD ABSENCE EPILESPYR01NS037466 · NINDS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI DURNER, MARTINA · 1999 to 2013
$4.8M
PSYCHIATRIC GENETICS AND FAMILY STUDIES--ROBUST METHODSR01MH048858 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HODGE, SUSAN E. · 1992 to 2010
$1.5M
TWO-LOCUS MODELS--HETEROGENEITY AND DIABETESR01DK031775 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GREENBERG, DAVID A. · 1987 to 2006
$1.1M
NIDDK NIH HHS DK 31775NIDDK NIH HHS R01 DK031775NIMH NIH HHS MH 48858NIMH NIH HHS R01 MH048858NINDS NIH HHS NS 279841NINDS NIH HHS NS 37466NINDS NIH HHS R01 NS027941NINDS NIH HHS R01 NS037466
6 · The paper itself

Abstract

Idiopathic generalized epilepsy (IGE) is a class of genetically determined, phenotypically related epilepsy syndromes. Linkage analysis identified a chromosome 18 locus predisposing to a number of adolescent-onset IGEs. We report a single-nucleotide polymorphism (SNP) association analysis of the region around the marker locus with the high LOD score. This analysis, which used both case-control and family-based association methods, yielded strong evidence that malic enzyme 2 (ME2) is the gene predisposing to IGE. We also observed association among subgroups of IGE syndromes. An ME2-centered nine-SNP haplotype, when present homozygously, increases the risk for IGE (odds ratio 6.1; 95% confidence interval 2.9-12.7) compared with any other genotype. Both the linkage analysis and the association analysis support recessive inheritance for the locus, which is compatible with the fact that ME2 is an enzyme. ME2 is a genome-coded mitochondrial enzyme that converts malate to pyruvate and is involved in neuronal synthesis of the neurotransmitter gamma-aminobutyric acid (GABA). The results suggest that GABA synthesis disruption predisposes to common IGE and that clinical seizures are triggered when mutations at other genes, or perhaps other insults, are present.

Indexed as

Chromosomes, Human, Pair 18Polymorphism, Single NucleotideAdolescentAge of OnsetChromosome MappingEpilepsy, GeneralizedGenes, RecessiveGenetic Predisposition to DiseaseHumansLod ScoreMalate DehydrogenaseMalate Dehydrogenasemalic enzyme 2; human

Identifiers

PMID15532013
PMCPMC1196416
OpenAlexW2118880610

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.