Evidence map›Paper›PMID 15531884›Full record

ArticleNature immunology2004

An evolutionarily conserved target motif for immunoglobulin class-switch recombination.

Ali A Zarrin, Frederick W Alt, Jayanta Chaudhuri, Nicole Stokes, Dhruv Kaushal, Louis Du Pasquier, Ming Tian

Abstract read
PubMed Publisher
In one paragraph

Article in Nature immunology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  5. Review
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  7. Article
  8. Review
  9. Review
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  12. Article
  13. DNA-PKcs phosphorylation at the T2609 cluster alters the repair pathway choice during immunoglobulin class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Review
  16. Kinase-dependent structural role of DNA-PKcs during immunoglobulin class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. JMolecular immunology · 2018
    Article
  18. Frog's DCs have it all in one.European journal of immunology · 2018
    Article
  19. Article
  20. Review

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Ali A ZarrinHoward Hughes Medical Institute, The Children's Hospital, CBR Institute for Biomedical Research, and Department of Genetics, Harvard University Medical School, Boston, Massachusetts 02115, USA.
Frederick W Alt
Jayanta Chaudhuri
Nicole Stokes
Dhruv Kaushal
Louis Du Pasquier
Ming Tian

Funding

MOLECULAR BASIS OF IMMUNE FUNCTION IN HEALTH AND DISEASEU01AI031541 · NIAID · CHILDREN'S HOSPITAL BOSTON · PI GEHA, RAIF SALIM · 1991 to 1994
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MOLECULAR BASIS OF IMMUNE FUNCTION IN HEALTH AND DISEASEU19AI031541 · NIAID · CHILDREN'S HOSPITAL BOSTON · PI MITCHELL, LESTER · 1995 to 1998
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NIAID NIH HHS AI07512NIAID NIH HHS AI31541
6 · The paper itself

Abstract

Immunoglobulin H class-switch recombination (CSR) occurs between switch regions and requires transcription and activation-induced cytidine deaminase (AID). Transcription through mammalian switch regions, because of their GC-rich composition, generates stable R-loops, which provide single-stranded DNA substrates for AID. However, we show here that the Xenopus laevis switch region S(mu), which is rich in AT and not prone to form R-loops, can functionally replace a mouse switch region to mediate CSR in vivo. X. laevis S(mu)-mediated CSR occurred mostly in a region of AGCT repeats targeted by the AID-replication protein A complex when transcribed in vitro. We propose that AGCT is a primordial CSR motif that targets AID through a non-R-loop mechanism involving an AID-replication protein A complex.

Indexed as

Evolution, MolecularAICDA (Activation-Induced Cytidine Deaminase)AnimalsBase SequenceConserved SequenceCytidine DeaminaseDeaminationDNADNA-Binding ProteinsHybridomasImmunoglobulin Class SwitchingImmunoglobulin GImmunoglobulin Switch RegionMiceMolecular Sequence DataMutagenesis, Site-DirectedAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseDNADNA-Binding ProteinsImmunoglobulin GReplication Protein ARpa1 protein, mouse

Identifiers

PMID15531884

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.