Evidence map›Paper›PMID 15531653›Full record

ArticleNucleic acids research2004

Futile short-patch DNA base excision repair of adenine:8-oxoguanine mispair.

Keiji Hashimoto, Yohei Tominaga, Yusaku Nakabeppu, Masaaki Moriya

Open access · hybridAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 57 citations in OpenAlex.

  1. Fidelity of DNA ligase I is sensitive to physiological MgThe Journal of biological chemistry · 2026
    Article
  2. Huntington's disease LIG1 modifier variant increases ligase fidelity and suppresses somatic CAG repeat expansion.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. 8-Oxoguanine: A Lesion, an Epigenetic Mark, or a Molecular Signal?International journal of molecular sciences · 2025
    Review
  4. Oxidative Stress and DNA Damage at Telomeres.Cold Spring Harbor perspectives in biology · 2025
    Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. The Sole DNA Ligase inFrontiers in cellular and infection microbiology · 2018
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Keiji HashimotoLaboratory of Chemical Biology, Department of Pharmacological Sciences, State University of New York, Stony Brook, NY 11794-8651, USA.
Yohei Tominaga
Yusaku Nakabeppu
Masaaki Moriya
State University of New York · US

Funding

THERMODYNAMIC PROPERTIES OF EXOCYCLIC DNA ADDUCTSP01CA047995 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI GROLLMAN, ARTHUR PATRICK · 1990 to 2009
$9.8M
Cellullar Response to DNA AdductsR01CA076163 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MORIYA, MASAAKI · 1999 to 2007
$1.5M
Cellular Response to DNA AdductsR56CA076163 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MORIYA, MASAAKI · 2009 to 2009
$233k
NCI NIH HHS CA47995NCI NIH HHS CA76163NCI NIH HHS P01 CA047995NCI NIH HHS R01 CA076163NCI NIH HHS R56 CA076163
6 · The paper itself

Abstract

8-oxo-7, 8-dihydrodeoxyguanosine (8-oxo-dG), one of the representative oxidative DNA lesions, frequently mispairs with the incoming dAMP during mammalian DNA replication. Mispaired dA is removed by post-replicative base excision repair (BER) initiated by adenine DNA glycosylase, MYH, creating an apurinic (AP) site. The subsequent mechanism ensuring a dC:8-oxo-dG pair, a substrate for 8-oxoguanine DNA glycosylase (OGG1), remains to be elucidated. At the nucleotide insertion step, none of the mammalian DNA polymerases examined exclusively inserted dC opposite 8-oxo-dG that was located in a gap. AP endonuclease 1, which possesses 3'-->5' exonuclease activity and potentially serves as a proofreader, did not discriminate dA from dC that was located opposite 8-oxo-dG. However, human DNA ligases I and III joined 3'-dA terminus much more efficiently than 3'-dC terminus when paired to 8-oxo-dG. In reconstituted short-patch BER, repair products contained only dA opposite 8-oxo-dG. These results indicate that human DNA ligases discriminate dC from dA and that MYH-initiated short-patch BER is futile and hence this BER must proceed to long-patch repair, even if it is initiated as short-patch repair, through strand displacement synthesis from the ligation-resistant dC terminus to generate the OGG1 substrate, dC:8-oxo-dG pair.

Indexed as

Base Pair MismatchDNA Repair8-Hydroxy-2'-DeoxyguanosineAdenineDeoxyadenine NucleotidesDeoxyadenosinesDeoxycytidineDeoxycytidine MonophosphateDeoxyguanosineDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Directed DNA PolymeraseDNA GlycosylasesDNA LigasesExodeoxyribonucleasesHumans2'-deoxy-5'-adenosine monophosphate8-Hydroxy-2'-DeoxyguanosineAdenineAPEX1 protein, humanDeoxyadenine NucleotidesDeoxyadenosinesDeoxycytidineDeoxycytidine MonophosphateDeoxyguanosineDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Directed DNA PolymeraseDNA GlycosylasesDNA LigasesExodeoxyribonucleasesmutY adenine glycosylase

Identifiers

PMID15531653
PMCPMC528794
OpenAlexW2083546232

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.