Evidence map›Paper›PMID 15528729›Full record

ArticleJournal of clinical microbiology2004

The cag pathogenicity island of Helicobacter pylori is disrupted in the majority of patient isolates from different human populations.

Farhana Kauser, Aleem A Khan, M Abid Hussain, Ian M Carroll, Naheed Ahmad, Santosh Tiwari, Yogesh Shouche, Bimal Das, Mahfooz Alam, S Mahaboob Ali and 5 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 90 citations in OpenAlex.

  1. Microbiology and molecular biology reviews : MMBR · 2026
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  5. Toxins · 2019
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  7. DifferentialPathogens (Basel, Switzerland) · 2019
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  8. World journal of gastroenterology · 2018
    Review
  9. Article
  10. Determination ofMedical journal of the Islamic Republic of Iran · 2017
    Article
  11. Genetic variants ofGut pathogens · 2017
    Article
  12. Mixed Infections ofGastroenterology research and practice · 2016
    Article
  13. Diversification of theFrontiers in microbiology · 2016
    Article
  14. Review
  15. Why do we still have Helicobacter Pylori in our Stomachs.The Malaysian journal of medical sciences : MJMS · 2015
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 6 countries.

Farhana KauserPathogen Evolution Group, Center for DNA Fingerprinting and Diagnostics, Hyderabad 500 076, India.
Aleem A Khan
M Abid Hussain
Ian M Carroll
Naheed Ahmad
Santosh Tiwari
Yogesh Shouche
Bimal Das
Mahfooz Alam
S Mahaboob Ali
C M Habibullah
Rafaela Sierra
Francis Megraud
Leonardo A Sechi
Niyaz Ahmed
Centre for DNA Fingerprinting and Diagnostics · INAllied Hospital · PKAll India Institute of Medical Sciences · INDeccan College of Medical Sciences · INHôpital Pellegrin · FRNational Centre for Cell Science · INPatna University · INTrinity College Dublin · IEUniversidad de Costa Rica · CRUniversity of Sassari · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cag pathogenicity island (cag-PAI) is one of the major virulence determinants of Helicobacter pylori. The chromosomal integrity of this island or the lack thereof is speculated to play an important role in the progress of the gastroduodenal pathology caused by H. pylori. We determined the integrity of the cag-PAI by using specific flanking and internally anchored PCR primers to know the biogeographical distribution of strains carrying fully integral cag-PAI with proinflammatory behavior in vivo. Genotypes based on eight selected loci were studied in 335 isolates obtained from eight different geographic regions. The cag-PAI appeared to be disrupted in the majority of patient isolates throughout the world. Conservation of cag-PAI was highest in Japanese isolates (57.1%). However, only 18.6% of the Peruvian and 12% of the Indian isolates carried an intact cag-PAI. The integrity of cag-PAI in European and African strains was minimal. All 10 strains from Costa Rica had rearrangements. Overall, a majority of the strains of East Asian ancestry were found to have intact cag-PAI compared to strains of other descent. We also found that the cagE and cagT genes were less often rearranged (18%) than the cagA gene (27%). We attempted to relate cag-PAI rearrangement patterns to disease outcome. Deletion frequencies of cagA, cagE, and cagT genes were higher in benign cases than in isolates from severe ulcers and gastric cancer. Conversely, the cagA promoter and the left end of the cag-PAI were frequently rearranged or deleted in isolates linked to severe pathology. Analysis of the cag-PAI genotypes with a different biogeoclimatic history will contribute to our understanding of the pathogen-host interaction in health and disease.

Indexed as

Gene DeletionAntigens, BacterialAsiaBacterial ProteinsCosta RicaEuropeGenotypeHelicobacter InfectionsHelicobacter pyloriHumansPolymerase Chain ReactionSouth AfricaVirulenceAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriPicB protein, Helicobacter pylori

Identifiers

PMID15528729
PMCPMC525253
OpenAlexW2133060614

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.