Evidence map›Paper›PMID 15528720›Full record

ArticleJournal of clinical microbiology2004

Carious dentine provides a habitat for a complex array of novel Prevotella-like bacteria.

Mangala A Nadkarni, C Elizabeth Caldon, Kim-Ly Chhour, Ilana P Fisher, F Elizabeth Martin, Nicholas A Jacques, Neil Hunter

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. Pooled it
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  8. Review
  9. Selective persistence of Propionibacterium species FMA5 following sealing of infected dentinal matrix.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2017
    Article
  10. Journal of oral microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Mangala A NadkarniInstitute of Dental Research, Westmead Millenium Institute, Wentworthville, New South Wales, Australia. mnadkarni@dental.wsahs.nsw.gov.au
C Elizabeth Caldon
Kim-Ly Chhour
Ilana P Fisher
F Elizabeth Martin
Nicholas A Jacques
Neil Hunter
Millennium Institute · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous analysis of the microbiology of advanced caries by culture and real-time PCR emphasized the high incidence and abundance of gram-negative anaerobic species, particularly Prevotella-like bacteria. The diversity of Prevotella-like bacteria was further explored by analyzing pooled bacterial DNA from lesions of carious dentine. This was achieved by amplification of a region of the 16S ribosomal DNA with a Prevotella genus-specific forward primer and a universal bacterial reverse primer, followed by cloning and sequencing. Cultured Prevotella species commonly associated with oral tissues constituted only 12% of the Prevotella clones isolated from advanced carious lesions. The remaining 88% consisted of a diverse range of phylotypes. These included five clusters of previously recognized but uncultured oral Prevotella spp. and a major cluster containing Prevotella-like bacteria most closely related to uncharacterized rumen bacteria. Cluster-specific primers were designed, and the numbers of bacteria within clusters were quantified by real-time PCR, confirming the abundance of these organisms. The data indicated that advanced dental caries provides a unique environment for a complex array of novel and uncultured Prevotella and Prevotella-like bacteria which, in some cases, may dominate the diverse polymicrobial community associated with the disease.

Indexed as

EcosystemAdolescentAdultAgedBacteroidaceae InfectionsDental CariesDentinDNA, BacterialDNA PrimersDNA, RibosomalFemaleHumansMaleMiddle AgedMolecular Sequence DataPhylogenyDNA, BacterialDNA PrimersDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID15528720
PMCPMC525250
OpenAlexW2124974690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.