Evidence map›Paper›PMID 15528703›Full record

ArticleJournal of clinical microbiology2004

Genetic diversity of human pathogenic members of the Fusarium oxysporum complex inferred from multilocus DNA sequence data and amplified fragment length polymorphism analyses: evidence for the recent dispersion of a geographically widespread clonal lineage and nosocomial origin.

Kerry O'Donnell, Deanna A Sutton, Michael G Rinaldi, Karen C Magnon, Patricia A Cox, Sanjay G Revankar, Stephen Sanche, David M Geiser, Jean H Juba, Jo-Anne H van Burik and 5 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

  1. Article
  2. Article
  3. Towards a Phylogenomic Framework for theInternational journal of molecular sciences · 2026
    Article
  4. Genome assembly of a clinicalMicrobiology resource announcements · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Virulence ofbioRxiv : the preprint server for biology · 2025
    Article
  12. The Dual PathogenJournal of fungi (Basel, Switzerland) · 2025
    Review
  13. Review
  14. Article
  15. Genomic Insights intoPathogens (Basel, Switzerland) · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Kerry O'DonnellNational Center for Agricultural Utilization Research, U.S. Department of Agriculture, Peoria, IL 61604-3999, USA. kodonnell@mail.ncaur.usda.gov
Deanna A Sutton
Michael G Rinaldi
Karen C Magnon
Patricia A Cox
Sanjay G Revankar
Stephen Sanche
David M Geiser
Jean H Juba
Jo-Anne H van Burik
Arvind Padhye
Elias J Anaissie
Andrea Francesconi
Thomas J Walsh
Jody S Robinson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium oxysporum is a phylogenetically diverse monophyletic complex of filamentous ascomycetous fungi that are responsible for localized and disseminated life-threatening opportunistic infections in immunocompetent and severely neutropenic patients, respectively. Although members of this complex were isolated from patients during a pseudoepidemic in San Antonio, Tex., and from patients and the water system in a Houston, Tex., hospital during the 1990s, little is known about their genetic relatedness and population structure. This study was conducted to investigate the global genetic diversity and population biology of a comprehensive set of clinically important members of the F. oxysporum complex, focusing on the 33 isolates from patients at the San Antonio hospital and on strains isolated in the United States from the water systems of geographically distant hospitals in Texas, Maryland, and Washington, which were suspected as reservoirs of nosocomial fusariosis. In all, 18 environmental isolates and 88 isolates from patients spanning four continents were genotyped. The major finding of this study, based on concordant results from phylogenetic analyses of multilocus DNA sequence data and amplified fragment length polymorphisms, is that a recently dispersed, geographically widespread clonal lineage is responsible for over 70% of all clinical isolates investigated, including all of those associated with the pseudoepidemic in San Antonio. Moreover, strains of the clonal lineage recovered from patients were conclusively shown to genetically match those isolated from the hospital water systems of three U.S. hospitals, providing support for the hypothesis that hospitals may serve as a reservoir for nosocomial fusarial infections.

Indexed as

Genetic VariationPolymorphism, Restriction Fragment LengthSequence Analysis, DNAAnimalsBacterial ProteinsCross InfectionEnvironmental MicrobiologyFusariumGlobal HealthHospitalsHumansMarylandMolecular EpidemiologyMolecular Sequence DataMycosesPhylogenyBacterial Proteins

Identifiers

PMID15528703
PMCPMC525153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.