ArticleCurrent genetics2004
Structural features and transcript-editing analysis of sugarcane (Saccharum officinarum L.) chloroplast genome.
Article in Current genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed, 88 citations in OpenAlex.
- Sugarcane Breeding in the Genomic Era: Integrative Strategies and Emerging Technologies.Plants (Basel, Switzerland) · 2026Review
- Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years.Current genomics · 2023Review
- A Comprehensive Evolutionary Study of Chloroplast RNA Editing in Gymnosperms: A Novel Type of G-to-A RNA Editing Is Common in Gymnosperms.International journal of molecular sciences · 2022Article
- Comparative Analysis of Chloroplast Genome inInternational journal of molecular sciences · 2022Article
- RNA editing in the chloroplast of Asian Palmyra palm (Borassus flabellifer).Genetics and molecular biology · 2020Article
- Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.GigaScience · 2019Article
- Identification and analysis of RNA editing sites in chloroplast transcripts of kenaf (3 Biotech · 2019Article
- Comparative Analysis of two Sugarcane AncestorsInternational journal of molecular sciences · 2019Article
- Article
- Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0.BMC bioinformatics · 2018Article
- The Challenge of Analyzing the Sugarcane Genome.Frontiers in plant science · 2018Review
- Article
- Identification and Analysis of RNA Editing Sites in the Chloroplast Transcripts of Aegilops tauschii L.Genes · 2016Article
- Abundant RNA editing sites of chloroplast protein-coding genes in Ginkgo biloba and an evolutionary pattern analysis.BMC plant biology · 2016Article
- Complete Chloroplast Genome Sequence and Annotation of the Saccharum Hybrid Cultivar RB867515.Genome announcements · 2016Article
- Chloroplast genomes: diversity, evolution, and applications in genetic engineering.Genome biology · 2016Review
- Plastid primers for angiosperm phylogenetics and phylogeography.Applications in plant sciences · 2015Article
- Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.AoB PLANTS · 2015Article
- RNA Editing in Chloroplasts of Spirodela polyrhiza, an Aquatic Monocotelydonous Species.PloS one · 2015Article
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Corrections and comments
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Authors and funding
6 authors at 4 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The complete nucleotide sequence of the chloroplast genome of sugarcane (Saccharum officinarum) was determined. It consists of 141,182 base-pairs (bp), containing a pair of inverted repeat regions (IR(A), IR(B)) of 22,794 bp each. The IR(A) and IR(B) sequences separate a small single copy region (12,546 bp) and a large single copy (83,048 bp) region. The gene content and relative arrangement of the 116 identified genes (82 peptide-encoding genes, four ribosomal RNA genes, 30 tRNA genes), with the 16 ycf genes, are highly similar to maize. Editing events, defined as C-to-U transitions in the mRNA sequences, were comparable with those observed in maize, rice and wheat. The conservation of gene organization and mRNA editing suggests a common ancestor for the sugarcane and maize plastomes. These data provide the basis for functional analysis of plastid genes and plastid metabolism within the Poaceae. The sugarcane chloroplast DNA sequence is available at GenBank under accession NC005878.
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