Evidence map›Paper›PMID 15516525›Full record

ArticleBiophysical journal2005

Cholesterol depletion suppresses the translational diffusion of class II major histocompatibility complex proteins in the plasma membrane.

Marija Vrljic, Stefanie Y Nishimura, W E Moerner, Harden M McConnell

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
  2. Article
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  8. Motional dynamics of single Patched1 molecules in cilia are controlled by Hedgehog and cholesterol.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. Mechanosensing in the immune response.Seminars in cell & developmental biology · 2017
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Organizing MHC Class II Presentation.Frontiers in immunology · 2014
    Review
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Marija VrljicBiophysics Program, Stanford University, Stanford, California 94305-5080, USA. marija@stanford.edu
Stefanie Y Nishimura
W E Moerner
Harden M McConnell
Stanford University · US

Funding

IMMUNOLOGY AND BIOPHYSICS OF RECONSTITUTED MEMBRANESR01AI013587 · NIAID · STANFORD UNIVERSITY · PI MC CONNELL, HARDEN M · 1985 to 2002
$1.1M
NIAID NIH HHS 5R01AI13587-26
6 · The paper itself

Abstract

Glycosylphosphatidylinositol (GPI)-linked and native major histocompatibility complex class II I-E(k) were used as probes to determine the effect of varying cholesterol concentration on the mobility of proteins in the plasma membrane. These proteins were imaged in Chinese hamster ovary cells using single-molecule fluorescence microscopy. Observed diffusion coefficients of both native and GPI-linked I-E(k) proteins were found to depend on cholesterol concentration. As the cholesterol concentration decreases the diffusion coefficients decrease by up to a factor of 7 for native and 5 for GPI-linked I-E(k). At low cholesterol concentrations, after sphingomyelinase treatment, the diffusion coefficients are reduced by up to a factor of 60 for native and 190 for GPI-linked I-E(k). The effect is reversible on cholesterol reintroduction. Diffusion at all studied cholesterol concentrations, for both proteins, appears to be predominantly Brownian for time lags up to 2.5 s when imaged at 10 Hz. A decrease in diffusion coefficients is observed for other membrane proteins and lipid probes, DiIC12 and DiIC18. Fluorescence recovery after photobleaching measurements shows that the fraction of immobile lipid probe increases from 8 to approximately 40% after cholesterol extraction. These results are consistent with the previous work on cholesterol-phospholipid interactions. That is, cholesterol extraction destroys liquid cholesterol-phospholipid complexes, leaving solid-like high melting phospholipid domains that inhibit the lateral diffusion of membrane components.

Indexed as

Major Histocompatibility ComplexActinsAnimalsAntineoplastic AgentsBiophysical PhenomenaBiophysicsCell MembraneCHO CellsCholesterolCricetinaeCytochalasin DCytoskeletonDiffusionGenes, MHC Class IIImage Processing, Computer-AssistedLipidsActinsAntineoplastic AgentsCholesterolCytochalasin DLipidsNocodazoleNucleic Acid Synthesis InhibitorsPhospholipidsProteinsSphingomyelins

Identifiers

PMID15516525
PMCPMC1305010
OpenAlexW2136640191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.