ArticleGenetics2004
A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice.
Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
39 citing papers in PubMed.
- Using a high density bin map to analyze quantitative trait locis of germination ability of maize at low temperatures.Frontiers in plant science · 2022Article
- High-resolution mapping of the pericentromeric region on wheat chromosome arm 5AS harbouring the Fusarium head blight resistance QTL Qfhs.ifa-5A.Plant biotechnology journal · 2018Article
- Recurrence of Chromosome Rearrangements and Reuse of DNA Breakpoints in the Evolution of the Triticeae Genomes.G3 (Bethesda, Md.) · 2016Article
- Article
- Development of a D genome specific marker resource for diploid and hexaploid wheat.BMC genomics · 2015Article
- Putative interchromosomal rearrangements in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring' revealed by gene locations on homoeologous chromosomes.BMC evolutionary biology · 2015Article
- Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications.BMC genomics · 2014Article
- Extensive pericentric rearrangements in the bread wheat (Triticum aestivum L.) genotype "Chinese Spring" revealed from chromosome shotgun sequence data.Genome biology and evolution · 2014Article
- Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat.Molecular genetics and genomics : MGG · 2014Article
- Whole genome association mapping of plant height in winter wheat (Triticum aestivum L.).PloS one · 2014Article
- Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing.PloS one · 2013Article
- Genetic analysis and molecular mapping of a new powdery mildew resistant gene Pm46 in common wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- High-density mapping and marker development for the powdery mildew resistance gene PmAS846 derived from wild emmer wheat (Triticum turgidum var. dicoccoides).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Construction of whole genome radiation hybrid panels and map of chromosome 5A of wheat using asymmetric somatic hybridization.PloS one · 2012Article
- First survey of the wheat chromosome 5A composition through a next generation sequencing approach.PloS one · 2011Article
- Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.BMC genomics · 2010Article
- Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium.Functional & integrative genomics · 2010Article
- Vrn-D4 is a vernalization gene located on the centromeric region of chromosome 5D in hexaploid wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Article
- Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.).Genetics · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
32 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We constructed high-density deletion bin maps of wheat chromosomes 5A, 5B, and 5D, including 2338 loci mapped with 1052 EST probes and 217 previously mapped loci (total 2555 loci). This information was combined to construct a consensus chromosome bin map of group 5 including 24 bins. A relatively higher number of loci were mapped on chromosome 5B (38%) compared to 5A (34%) and 5D (28%). Differences in the levels of polymorphism among the three chromosomes were partially responsible for these differences. A higher number of duplicated loci was found on chromosome 5B (42%). Three times more loci were mapped on the long arms than on the short arms, and a significantly higher number of probes, loci, and duplicated loci were mapped on the distal halves than on the proximal halves of the chromosome arms. Good overall colinearity was observed among the three homoeologous group 5 chromosomes, except for the previously known 5AL/4AL translocation and a putative small pericentric inversion in chromosome 5A. Statistically significant colinearity was observed between low-copy-number ESTs from wheat homoeologous group 5 and rice chromosomes 12 (88 ESTs), 9 (72 ESTs), and 3 (84 ESTs).
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.