Evidence map›Paper›PMID 15514041›Full record

ArticleGenetics2004

Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1.

J D Munkvold, R A Greene, C E Bermudez-Kandianis, C M La Rota, H Edwards, S F Sorrells, T Dake, D Benscher, R Kantety, A M Linkiewicz and 28 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
11.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
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  6. Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 12 institutions in 1 country.

J D MunkvoldDepartment of Plant Breeding, Cornell University, Ithaca, New York 14853, USA.
R A Greene
C E Bermudez-Kandianis
C M La Rota
H Edwards
S F Sorrells
T Dake
D Benscher
R Kantety
A M Linkiewicz
J Dubcovsky
E D Akhunov
J Dvorák
Miftahudin
J P Gustafson
M S Pathan
H T Nguyen
D E Matthews
S Chao
G R Lazo
D D Hummel
O D Anderson
J A Anderson
J L Gonzalez-Hernandez
J H Peng
N Lapitan
L L Qi
B Echalier
B S Gill
K G Hossain
V Kalavacharla
S F Kianian
D Sandhu
M Erayman
K S Gill
P E McGuire
C O Qualset
M E Sorrells
Cornell University · USUniversity of California, Davis · USKansas State University · USUnited States Department of Agriculture · USUniversity of Missouri · USWashington State University · USNorth Dakota State University · USUniversity of Minnesota · USColorado State University · USDakota State University · USIowa State University · USWestern Regional Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The focus of this study was to analyze the content, distribution, and comparative genome relationships of 996 chromosome bin-mapped expressed sequence tags (ESTs) accounting for 2266 restriction fragments (loci) on the homoeologous group 3 chromosomes of hexaploid wheat (Triticum aestivum L.). Of these loci, 634, 884, and 748 were mapped on chromosomes 3A, 3B, and 3D, respectively. The individual chromosome bin maps revealed bins with a high density of mapped ESTs in the distal region and bins of low density in the proximal region of the chromosome arms, with the exception of 3DS and 3DL. These distributions were more localized on the higher-resolution group 3 consensus map with intermediate regions of high-mapped-EST density on both chromosome arms. Gene ontology (GO) classification of mapped ESTs was not significantly different for homoeologous group 3 chromosomes compared to the other groups. A combined analysis of the individual bin maps using 537 of the mapped ESTs revealed rearrangements between the group 3 chromosomes. Approximately 232 (44%) of the consensus mapped ESTs matched sequences on rice chromosome 1 and revealed large- and small-scale differences in gene order. Of the group 3 mapped EST unigenes approximately 21 and 32% matched the Arabidopsis coding regions and proteins, respectively, but no chromosome-level gene order conservation was detected.

Indexed as

Chromosome MappingGenes, PlantChromosomes, PlantGenome, PlantOryzaSequence AlignmentTriticum

Identifiers

PMID15514041
PMCPMC1448823
OpenAlexW2102065097

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.