Evidence map›Paper›PMID 15514039›Full record

ArticleGenetics2004

Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and Arabidopsis.

J H Peng, H Zadeh, G R Lazo, J P Gustafson, S Chao, O D Anderson, L L Qi, B Echalier, B S Gill, M Dilbirligi and 20 more

Abstract readComparative Study
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

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  17. Identification and characterization of a novel host-toxin interaction in the wheat-Stagonospora nodorum pathosystem.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

J H PengDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado 80523-1170, USA.
H Zadeh
G R Lazo
J P Gustafson
S Chao
O D Anderson
L L Qi
B Echalier
B S Gill
M Dilbirligi
D Sandhu
K S Gill
R A Greene
M E Sorrells
E D Akhunov
J Dvorák
A M Linkiewicz
J Dubcovsky
K G Hossain
V Kalavacharla
S F Kianian
A A Mahmoud
Miftahudin
E J Conley
J A Anderson
M S Pathan
H T Nguyen
P E McGuire
C O Qualset
N L V Lapitan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A total of 944 expressed sequence tags (ESTs) generated 2212 EST loci mapped to homoeologous group 1 chromosomes in hexaploid wheat (Triticum aestivum L.). EST deletion maps and the consensus map of group 1 chromosomes were constructed to show EST distribution. EST loci were unevenly distributed among chromosomes 1A, 1B, and 1D with 660, 826, and 726, respectively. The number of EST loci was greater on the long arms than on the short arms for all three chromosomes. The distribution of ESTs along chromosome arms was nonrandom with EST clusters occurring in the distal regions of short arms and middle regions of long arms. Duplications of group 1 ESTs in other homoeologous groups occurred at a rate of 35.5%. Seventy-five percent of wheat chromosome 1 ESTs had significant matches with rice sequences (E < or = e(-10)), where large regions of conservation occurred between wheat consensus chromosome 1 and rice chromosome 5 and between the proximal portion of the long arm of wheat consensus chromosome 1 and rice chromosome 10. Only 9.5% of group 1 ESTs showed significant matches to Arabidopsis genome sequences. The results presented are useful for gene mapping and evolutionary and comparative genomics of grasses.

Indexed as

Chromosome MappingExpressed Sequence TagsPloidiesArabidopsisChromosomes, PlantGenes, PlantGenome, PlantOryzaSequence AlignmentTriticum

Identifiers

PMID15514039
PMCPMC1448821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.