ArticleGenetics2004
Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-locus bin-delineated map.
Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
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Who cites it
39 citing papers in PubMed.
- Structural and Functional Characterization at the Molecular Level of the MATE Gene Family in Wheat in Silico.Contrast media & molecular imaging · 2022Article
- Fine mapping of the wheat powdery mildew resistance gene Pm52 using comparative genomics analysis and the Chinese Spring reference genomic sequence.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- A High-Density Consensus Map of Common Wheat Integrating Four Mapping Populations Scanned by the 90K SNP Array.Frontiers in plant science · 2017Article
- Utilization of deletion bins to anchor and order sequences along the wheat 7B chromosome.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides).PloS one · 2014Article
- The gene space in wheat: the complete γ-gliadin gene family from the wheat cultivar Chinese Spring.Functional & integrative genomics · 2013Article
- Cloning and characterization of two Argonaute genes in wheat (Triticum aestivum L.).BMC plant biology · 2013Article
- A physical map of the short arm of wheat chromosome 1A.PloS one · 2013Article
- dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.Database : the journal of biological databases and curation · 2013Article
- Integrating cereal genomics to support innovation in the Triticeae.Functional & integrative genomics · 2012Review
- Identification of drought-responsive universal stress proteins in viridiplantae.Bioinformatics and biology insights · 2011Article
- Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.BMC genomics · 2010Article
- Development of EST-PCR markers for Thinopyrum intermedium chromosome 2Ai#2 and their application in characterization of novel wheat-grass recombinants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- In silico identification of coffee genome expressed sequences potentially associated with resistance to diseases.Genetics and molecular biology · 2010Article
- A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.BMC genomics · 2009Article
- Expressed sequence tag analysis and development of gene associated markers in a near-isogenic plant system of Eragrostis curvula.Plant molecular biology · 2008Article
- The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences.Functional & integrative genomics · 2008Article
- Pm37, a new broadly effective powdery mildew resistance gene from Triticum timopheevii.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Article
- PCR-based landmark unique gene (PLUG) markers effectively assign homoeologous wheat genes to A, B and D genomes.BMC genomics · 2007Article
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Authors and funding
41 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This report describes the rationale, approaches, organization, and resource development leading to a large-scale deletion bin map of the hexaploid (2n = 6x = 42) wheat genome (Triticum aestivum L.). Accompanying reports in this issue detail results from chromosome bin-mapping of expressed sequence tags (ESTs) representing genes onto the seven homoeologous chromosome groups and a global analysis of the entire mapped wheat EST data set. Among the resources developed were the first extensive public wheat EST collection (113,220 ESTs). Described are protocols for sequencing, sequence processing, EST nomenclature, and the assembly of ESTs into contigs. These contigs plus singletons (unassembled ESTs) were used for selection of distinct sequence motif unigenes. Selected ESTs were rearrayed, validated by 5' and 3' sequencing, and amplified for probing a series of wheat aneuploid and deletion stocks. Images and data for all Southern hybridizations were deposited in databases and were used by the coordinators for each of the seven homoeologous chromosome groups to validate the mapping results. Results from this project have established the foundation for future developments in wheat genomics.
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