Evidence map›Paper›PMID 15510372›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004

A PCR based B-genome-specific marker in Brassica species.

C J Schelfhout, R Snowdon, W A Cowling, J M Wroth

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Development of Brassica rapa-nigra monosomic alien addition lines: cytology, genetics, and morphology.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  3. Article
  4. Production and cytology of Brassica autoallohexaploids with two and four copies of two subgenomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Investigating genetic relationship ofMolecular breeding : new strategies in plant improvement · 2021
    Article
  9. Article
  10. Article
  11. Development of Brassica oleracea-nigra monosomic alien addition lines: genotypic, cytological and morphological analyses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  12. Article
  13. Article
  14. Distinct subgenome stabilities in synthesized Brassica allohexaploids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Cytogenetics and genome analysis in Brassica crops.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2007
    Review
  19. Molecular cytogenetic analysis of Brassica rapa-Brassica oleracea var. alboglabra monosomic addition lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

C J SchelfhoutSchool of Plant Biology, Faculty of Natural and Agricultural Sciences, The University of Western Australia, Crawley, Australia. cschelfh@agric.uwa.edu.au
R Snowdon
W A Cowling
J M Wroth

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous hybridisation studies showed that the repetitive DNA sequence pBNBH35 from Brassica nigra (genome BB, 2n=16) bound specifically to the B-genome and not to the A- or C-genomes of Brassica species. We amplified a sub-fragment of pBNBH35 from B. nigra by PCR, cloned and sequenced this sub-fragment, and confirmed that it was a 329-bp sub-fragment of pBNBH35. PCR and hybridisation techniques were used to confirm that the pBNBH35 sub-fragment was Brassica B-genome-specific. Fluorescence in situ hybridisation (FISH) in B. nigra, B. juncea (AABB, 2n=36) and B. napus (AACC, 2n=38) showed that the pBNBH35 sub-fragment was present on all eight Brassica B-genome chromosomes and absent from the A- and C-genome chromosomes. The pBNBH35 repeat was localised to the centromeric region of each B-genome chromosome. FISH clearly distinguished the B-genome chromosomes from the A-genome chromosomes in the amphidiploid species B. juncea. This is the first known report of a B-genome repetitive marker that is present on all B-genome chromosomes. It will be a useful tool for the detection of B chromosomes in interspecific hybrids and may prove useful for phylogenetic studies in Brassica species.

Indexed as

Genome, PlantBase SequenceBrassicaChromosomes, PlantDNA PrimersGenetic MarkersIn Situ Hybridization, FluorescenceMolecular Sequence DataNucleotide MappingPolymerase Chain ReactionSequence Analysis, DNADNA PrimersGenetic Markers

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.