Evidence map›Paper›PMID 15501938›Full record

ArticleBiophysical journal2005

Frequency encoding of T-cell receptor engagement dynamics in calcium time series.

Clemens Utzny, Mustapha Faroudi, Salvatore Valitutti

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  10. Understanding the temporal codes of intra-cellular signals.Current opinion in genetics & development · 2010
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Clemens UtznyLymphocyte Interaction Group, Institut Claude de Préval, Institut National de la Santé et de la Recherche Médicale U563, Toulouse, France. utznycle@touluse.inserm.fr
Mustapha Faroudi
Salvatore Valitutti
Inserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sustained increase of the cytosolic calcium concentration ([Ca2+]i) plays a central role in T-cell receptor (TCR)-mediated T-cell activation. Previous experiments using a [Ca2+]i clamp technique have demonstrated that specificity is encoded by the [Ca2+]i oscillation frequency since cytokine transcription factors are activated in a frequency-dependent manner. An outstanding question is how encoding of specific activation occurs under physiological conditions. In this case, continuous TCR interactions with specific peptides bound to cell surface-associated major histocompatibility complexes are driving the sustained [Ca2+]i increase. Addressing this question, we analyzed [Ca2+]i time series from individual T-cells mathematically. We are able to identify signal fluctuations associated with the TCR-triggering dynamics. We also find that [Ca2+]i time series associated with T-cells activated to IFN-gamma production exhibit oscillations with higher frequencies than the time series corresponding to T-cells not activated to IFN-gamma production. We show that signal autocorrelations are a means to distinguish functional signals according to their associated cytokine production. The signal level, however, allows for the distinction of nonfunctional from functional signals. These findings provide strong evidence for specificity encoding of biological functions in intracellular signals via signal level and signal correlations.

Indexed as

BiophysicsCalciumHumansInterferon-gammaLymphocyte ActivationModels, BiologicalModels, TheoreticalOscillometryPeptidesReceptors, Antigen, T-CellSignal TransductionTime FactorsT-LymphocytesCalciumInterferon-gammaPeptidesReceptors, Antigen, T-Cell

Identifiers

PMID15501938
PMCPMC1304989
OpenAlexW2001015111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.