Evidence map›Paper›PMID 15498160›Full record

ArticleEmerging infectious diseases2004

Genotyping, Orientalis-like Yersinia pestis, and plague pandemics.

Michel Drancourt, Véronique Roux, La Vu Dang, Lam Tran-Hung, Dominique Castex, Viviane Chenal-Francisque, Hiroyuki Ogata, Pierre-Edouard Fournier, Eric Crubézy, Didier Raoult

Abstract readHistorical Article
In one paragraph

Article in Emerging infectious diseases, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Review
  2. Article
  3. Zoonoses (Shannon, Ireland) · 2023
    Article
  4. Review
  5. Correlating Genotyping Data ofPathogens (Basel, Switzerland) · 2021
    Article
  6. Article
  7. Ancient dental pulp: Masterpiece tissue for paleomicrobiology.Molecular genetics & genomic medicine · 2020
    Review
  8. The Justinianic Plague: An inconsequential pandemic?Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. AncientProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Archaeogenetics in evolutionary medicine.Journal of molecular medicine (Berlin, Germany) · 2016
    Review
  15. Article
  16. Article
  17. Enzootic plague foci, Algeria.New microbes and new infections · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Michel DrancourtUniversité de la Méditerranée, Marseille, France.
Véronique Roux
La Vu Dang
Lam Tran-Hung
Dominique Castex
Viviane Chenal-Francisque
Hiroyuki Ogata
Pierre-Edouard Fournier
Eric Crubézy
Didier Raoult

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Three pandemics have been attributed to plague in the last 1,500 years. Yersinia pestis caused the third, and its DNA was found in human remains from the second. The Antiqua biovar of Y. pestis may have caused the first pandemic; the other two biovars, Medievalis and Orientalis, may have caused the second and third pandemics, respectively. To test this hypothesis, we designed an original genotyping system based on intergenic spacer sequencing called multiple spacer typing (MST). We found that MST differentiated every biovar in a collection of 36 Y. pestis isolates representative of the three biovars. When MST was applied to dental pulp collected from remains of eight persons who likely died in the first and second pandemics, this system identified original sequences that matched those of Y. pestis Orientalis. These data indicate that Y. pestis caused cases of Justinian plague. The two historical plague pandemics were likely caused by Orientalis-like strains.

Indexed as

Base SequenceDental PulpDisease OutbreaksDNA, IntergenicGenes, ViralGenotypeGlobal HealthHistory, AncientHistory, MedievalHumansMolecular EpidemiologyMutationPhylogenyPlagueSequence Analysis, DNAYersinia pestisDNA, Intergenic

Identifiers

PMID15498160
PMCPMC3320270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.