ArticleGenetics2005
Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana.
Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Biosynthetic gene clusters inmSystems · 2026Article
- Characterization of Pseudomonas mediterranea and Pseudomonas viridiflava strains associated with tomato pith necrosis in the Al Taif region, Saudi Arabia.Scientific reports · 2026Article
- Adaptation without Dominance in Pseudomonas syringae Pathovars.Microbial ecology · 2025Article
- Phylogenomic analyses and comparative genomics of Pseudomonas syringae associated with almond (Prunus dulcis) in California.PloS one · 2024Article
- Biochemical Diversity, Pathogenicity and Phylogenetic Analysis ofMicroorganisms · 2022Article
- Pseudomonas viridiflava: An internal outsider of the Pseudomonas syringae species complex.Molecular plant pathology · 2022Article
- Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.BMC genomics · 2019Article
- Complete Genome Sequence ofGenome announcements · 2017Article
- High-Quality Draft Genome Sequence of an Endophytic Pseudomonas viridiflava Strain with Herbicidal Properties against Its Host, the Weed Lepidium draba L.Genome announcements · 2016Article
- Article
- A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection.BMC bioinformatics · 2014Article
- Whole-Genome Shotgun Sequence of Pseudomonas viridiflava, a Bacterium Species Pathogenic to Ararabidopsis thaliana.Genome announcements · 2013Article
- Plant-growth promoting effect of newly isolated rhizobacteria varies between two Arabidopsis ecotypes.Plant signaling & behavior · 2012Article
- Pseudomonas viridiflava, a multi host plant pathogen with significant genetic variation at the molecular level.PloS one · 2012Article
- Cheating, trade-offs and the evolution of aggressiveness in a natural pathogen population.Ecology letters · 2011Article
- Natural competence and recombination in the plant pathogen Xylella fastidiosa.Applied and environmental microbiology · 2011Article
- Local expansion of a panmictic lineage of water bloom-forming cyanobacterium Microcystis aeruginosa.PloS one · 2011Article
- Article
- Impact of recombination on bacterial evolution.Trends in microbiology · 2010Review
- HIV classification using the coalescent theory.Bioinformatics (Oxford, England) · 2010Article
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3 authors.
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Abstract
Species-level genetic diversity and recombination in bacterial pathogens of wild plant populations have been nearly unexplored. Pseudomonas viridiflava is a common natural bacterial pathogen of Arabidopsis thaliana, for which pathogen defense genes and mechanisms are becoming increasing well known. The genetic variation contained within a worldwide sample of P. viridiflava collected from wild populations of A. thaliana was investigated using five genomic sequence fragments totaling 2.3 kb. Two distinct and deeply diverged clades were found within the P. viridiflava sample and in close proximity in multiple populations, each genetically diverse with synonymous variation as high as 9.3% in one of these clades. Within clades, there is evidence of frequent recombination within and between each sequenced locus and little geographic differentiation. Isolates from both clades were also found in a small sample of other herbaceous species in Midwest populations, indicating a possibly broad host range for P. viridiflava. The high levels of genetic variation and recombination together with a lack of geographic differentiation in this pathogen distinguish it from other bacterial plant pathogens for which intraspecific variation has been examined.
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