Evidence map›Paper›PMID 15489447›Full record

ArticleJournal of bacteriology2004

TouR-mediated effector-independent growth phase-dependent activation of the sigma54 Ptou promoter of Pseudomonas stutzeri OX1.

Dafne Solera, Fabio L G Arenghi, Tanja Woelk, Enrica Galli, Paola Barbieri

Abstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Biology of Pseudomonas stutzeri.Microbiology and molecular biology reviews : MMBR · 2006
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dafne SoleraDipartimento di Biologia Strutturale e Funzionale, Università degli Studi di Milano, Milan, Italy.
Fabio L G Arenghi
Tanja Woelk
Enrica Galli
Paola Barbieri

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription of the catabolic touABCDEF operon, encoding the toluene-o-xylene monooxygenase of Pseudomonas stutzeri OX1, is driven by the sigma(54)-dependent Ptou promoter, whose activity is controlled by the phenol-responsive NtrC-like activator TouR. In this paper we describe for the first time a peculiar characteristic of this system, namely, that Ptou transcription is activated in a growth phase-dependent manner in the absence of genuine effectors of the cognate TouR regulator. This phenomenon, which we named gratuitous activation, was observed in the native strain P. stutzeri OX1, as well as in a Pseudomonas putida PaW340 host harboring the reconstructed tou regulatory circuit. Regulator-promoter swapping experiments demonstrated that the presence of TouR is necessary and sufficient for imposing gratuitous activation on the Ptou promoter, as well as on other sigma(54)-dependent catabolic promoters, whereas the highly similar phenol-responsive activator DmpR is unable to activate the Ptou promoter in the absence of effectors. We show that this phenomenon is specifically triggered by carbon source exhaustion but not by nitrogen starvation. An updated model of the tou regulatory circuit is presented.

Indexed as

Gene Expression Regulation, BacterialPromoter Regions, GeneticCarbonCulture MediaDNA-Binding ProteinsDNA-Directed RNA PolymerasesOxygenasesPseudomonas stutzeriRNA Polymerase Sigma 54Sigma FactorTolueneTrans-ActivatorsTranscription, GeneticXylenesCarbonCulture MediaDNA-Binding ProteinsDNA-Directed RNA PolymerasesOxygenasesRNA Polymerase Sigma 54Sigma FactorToluenetoluene 2-xylene monooxygenaseTrans-ActivatorsXylenes

Identifiers

PMID15489447
PMCPMC523194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.