Evidence map›Paper›PMID 15489301›Full record

ArticleBiophysical journal2005

Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection.

Alex Evilevitch, James W Gober, Martin Phillips, Charles M Knobler, William M Gelbart

Abstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Single-particle virology.Biophysical reviews · 2020
    Review
  4. Frontiers in microbiology · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Nucleic acid packaging in viruses.Current opinion in structural biology · 2012
    Review
  16. Single-molecule studies of viral DNA packaging.Advances in experimental medicine and biology · 2012
    Review
  17. Article
  18. Article
  19. Article
  20. Structure of toroidal DNA collapsed inside the phage capsid.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alex EvilevitchDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, USA.
James W Gober
Martin Phillips
Charles M Knobler
William M Gelbart

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The effect of external osmotic pressure on the extent of DNA ejection from bacteriophage-lambda was recently investigated (Evilevitch et al., 2003). The total length of DNA ejected was measured via the 260-nm absorption by free nucleotides, after opening of the capsids in the presence of varying amounts of polyethylene glycol 8000 and DNase I. As a function of osmolyte concentration, this absorption was shown to decrease progressively, ultimately vanishing completely for a sufficiently high external osmotic pressure. In this work we report the results of both sedimentation and gel analysis of the length of DNA remaining inside the capsids, as a function of osmolyte concentration. It is confirmed in this way that the progressive inhibition of DNA ejection corresponds to partial ejection from all of the capsids.

Indexed as

DNAAbsorptionAntigens, ViralBacteriophage lambdaCapsidCryoelectron MicroscopyDeoxyribonuclease IElectrophoresisElectrophoresis, Gel, Pulsed-FieldEscherichia coliOsmosisOsmotic PressurePhenolPolyethylene GlycolsUltraviolet RaysAntigens, ViralDeoxyribonuclease IDNAPhenolPolyethylene Glycols

Identifiers

PMID15489301
PMCPMC1305050

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.