Evidence map›Paper›PMID 15489235›Full record

ArticleThe Journal of biological chemistry2004

Periplasmic cleavage and modification of the 1-phosphate group of Helicobacter pylori lipid A.

An X Tran, Mark J Karbarz, Xiaoyuan Wang, Christian R H Raetz, Sara C McGrath, Robert J Cotter, M Stephen Trent

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 95 citations in OpenAlex.

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  10. TheMicroorganisms · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

An X TranDepartment of Microbiology, J. H. Quillen College of Medicine, Johnson City, TN 37614, USA.
Mark J Karbarz
Xiaoyuan Wang
Christian R H Raetz
Sara C McGrath
Robert J Cotter
M Stephen Trent
Duke University · USJohns Hopkins University · USJames H. Quillen VA Medical Center · US

Funding

LIPID A MODIFICATION SYSTEMS IN GRAM-NEGATIVE BACTERIAR37GM051796 · NIGMS · DUKE UNIVERSITY · PI RAETZ, CHRISTIAN R · 1999 to 2008
$3.0M
Modification of Helicobacter pylori Lipid AK22AI053645 · NIAID · EAST TENNESSEE STATE UNIVERSITY · PI TRENT, MICHAEL STEPHEN · 2003 to 2004
$268k
NIAID NIH HHS K22 AI053645NIAID NIH HHS K22 AI 53645NIGMS NIH HHS R01 GM 6440NIGMS NIH HHS R37 GM051796NIGMS NIH HHS R37 GM 51796
6 · The paper itself

Abstract

Pathogenic bacteria modify the lipid A portion of their lipopolysaccharide to help evade the host innate immune response. Modification of the negatively charged phosphate groups of lipid A aids in resistance to cationic antimicrobial peptides targeting the bacterial cell surface. The lipid A of Helicobacter pylori contains a phosphoethanolamine (pEtN) unit directly linked to the 1-position of the disaccharide backbone. This is in contrast to the pEtN units found in other pathogenic Gram-negative bacteria, which are attached to the lipid A phosphate group to form a pyrophosphate linkage. This study describes two enzymes involved in the periplasmic modification of the 1-phosphate group of H. pylori lipid A. By using an in vitro assay system, we demonstrate the presence of lipid A 1-phosphatase activity in membranes of H. pylori. In an attempt to identify genes encoding possible lipid A phosphatases, we cloned four putative orthologs of Escherichia coli pgpB, the phosphatidylglycerol-phosphate phosphatase, from H. pylori 26695. One of these orthologs, Hp0021, is the structural gene for the lipid A 1-phosphatase and is required for removal of the 1-phosphate group from mature lipid A in an in vitro assay system. Heterologous expression of Hp0021 in E. coli resulted in the highly selective removal of the 1-phosphate group from E. coli lipid A, as demonstrated by mass spectrometry. We also identified the structural gene for the H. pylori lipid A pEtN transferase (Hp0022). Mass spectrometric analysis of the lipid A isolated from E. coli expressing Hp0021 and Hp0022 shows the addition of a single pEtN group at the 1-position, confirming that Hp0022 is responsible for the addition of a pEtN unit at the 1-position in H. pylori lipid A. In summary, we demonstrate that modification of the 1-phosphate group of H. pylori lipid A requires two enzymatic steps.

Indexed as

Antimicrobial Cationic PeptidesATP-Binding Cassette TransportersBacterial ProteinsCarbohydrate SequenceCell-Free SystemCell MembraneCloning, MolecularDetergentsDNAEscherichia coliEthanolaminesGenetic VectorsGenotypeHelicobacter pyloriLipid AMass SpectrometryAntimicrobial Cationic PeptidesATP-Binding Cassette TransportersBacterial ProteinsDetergentsDNAEthanolaminesLipid AMsbA protein, BacteriaOligonucleotidesPhosphatesPhosphoric Monoester Hydrolasesphosphorylethanolamine

Identifiers

PMID15489235
PMCPMC2552395
OpenAlexW2097504842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.