Evidence map›Paper›PMID 15483057›Full record

ArticleMolecular biology of the cell2004

Cold adaptation in budding yeast.

Babette Schade, Gregor Jansen, Malcolm Whiteway, Karl D Entian, David Y Thomas

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Review
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  15. Selection and subsequent physiological characterization of industrialBiotechnology reports (Amsterdam, Netherlands) · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Rapid Identification of Major QTLFrontiers in microbiology · 2018
    Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Babette SchadeBiotechnology Research Institute, National Research Council of Canada, Montreal, Quebec, Canada H4P 2R2. babette.schade@mcgill.ca
Gregor Jansen
Malcolm Whiteway
Karl D Entian
David Y Thomas

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have determined the transcriptional response of the budding yeast Saccharomyces cerevisiae to cold. Yeast cells were exposed to 10 degrees C for different lengths of time, and DNA microarrays were used to characterize the changes in transcript abundance. Two distinct groups of transcriptionally modulated genes were identified and defined as the early cold response and the late cold response. A detailed comparison of the cold response with various environmental stress responses revealed a substantial overlap between environmental stress response genes and late cold response genes. In addition, the accumulation of the carbohydrate reserves trehalose and glycogen is induced during late cold response. These observations suggest that the environmental stress response (ESR) occurs during the late cold response. The transcriptional activators Msn2p and Msn4p are involved in the induction of genes common to many stress responses, and we show that they mediate the stress response pattern observed during the late cold response. In contrast, classical markers of the ESR were absent during the early cold response, and the transcriptional response of the early cold response genes was Msn2p/Msn4p independent. This implies that the cold-specific early response is mediated by a different and as yet uncharacterized regulatory mechanism.

Indexed as

Cold TemperatureGene Expression ProfilingGene Expression Regulation, FungalAdaptation, PhysiologicalCarbohydrate MetabolismCluster AnalysisGenes, FungalRNA, FungalSaccharomyces cerevisiaeTime FactorsTranscription, GeneticRNA, Fungal

Identifiers

PMID15483057
PMCPMC532028

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.