Evidence map›Paper›PMID 15477388›Full record

ArticleNucleic acids research2004

A high resolution protein interaction map of the yeast Mediator complex.

Benjamin Guglielmi, Nynke L van Berkum, Benjamin Klapholz, Theo Bijma, Muriel Boube, Claire Boschiero, Henri-Marc Bourbon, Frank C P Holstege, Michel Werner

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed.

  1. Article
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  9. Identification of theFrontiers in plant science · 2021
    Article
  10. MedProDB: A database of Mediator proteins.Computational and structural biotechnology journal · 2021
    Article
  11. Possible Role for Allelic Variation in YeastFrontiers in microbiology · 2021
    Article
  12. Article
  13. Review
  14. Twenty years of Mediator complex structural studies.Biochemical Society transactions · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Benjamin GuglielmiService de Biochimie et Génétique Moléculaire, Bâtiment 144, CEA/Saclay, 91191 Gif-sur-Yvette Cedex, France.
Nynke L van Berkum
Benjamin Klapholz
Theo Bijma
Muriel Boube
Claire Boschiero
Henri-Marc Bourbon
Frank C P Holstege
Michel Werner

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mediator is a large, modular protein complex remotely conserved from yeast to man that conveys regulatory signals from DNA-binding transcription factors to RNA polymerase II. In Saccharomyces cerevisiae, Mediator is thought to be composed of 24 subunits organized in four sub-complexes, termed the head, middle, tail and Cdk8 (Srb8-11) modules. In this work, we have used screening and pair-wise two-hybrid approaches to investigate protein-protein contacts between budding yeast Mediator subunits. The derived interaction map includes the delineation of numerous interaction domains between Mediator subunits, frequently corresponding to segments that have been conserved in evolution, as well as novel connections between the Cdk8 (Srb8-11) and head modules, the head and middle modules, and the middle and tail modules. The two-hybrid analysis, together with co-immunoprecipitation studies and gel filtration experiments revealed that Med31 (Soh1) is associated with the yeast Mediator that therefore comprises 25 subunits. Finally, analysis of the protein interaction network within the Drosophila Mediator middle module indicated that the structural organization of the Mediator complex is conserved from yeast to metazoans. The resulting interaction map provides a framework for delineating Mediator structure-function and investigating how Mediator function is regulated.

Indexed as

AnimalsDrosophila melanogasterDrosophila ProteinsGenomic LibraryMacromolecular SubstancesMediator ComplexProtein Structure, TertiaryProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTwo-Hybrid System TechniquesDrosophila ProteinsMacromolecular SubstancesMediator ComplexProtein SubunitsSaccharomyces cerevisiae ProteinsSOH1 protein, S cerevisiae

Identifiers

PMID15477388
PMCPMC524289

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.