Evidence map›Paper›PMID 15476412›Full record

ArticleBiochemistry2004

Demonstration of a specific Escherichia coli SecY-signal peptide interaction.

Ligong Wang, Alexander Miller, Sharyn L Rusch, Debra A Kendall

Abstract read
In one paragraph

Article in Biochemistry, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Membrane protein insertion at the endoplasmic reticulum.Annual review of cell and developmental biology · 2011
    Review
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  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ligong WangDepartment of Molecular and Cell Biology, The University of Connecticut, Storrs, Connecticut 06269, USA.
Alexander Miller
Sharyn L Rusch
Debra A Kendall
University of Connecticut · US

Funding

REDESIGN OF STRUCTURAL REGIONS OF ALKALINE PHOSPHATASER01GM037639 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI KENDALL, DEBRA A · 1987 to 2011
$3.8M
NIGMS NIH HHS GM37639NIGMS NIH HHS R01 GM037639
6 · The paper itself

Abstract

Protein translocation in Escherichia coli is initiated by the interaction of a preprotein with the membrane translocase composed of a motor protein, SecA ATPase, and a membrane-embedded channel, the SecYEG complex. The extent to which the signal peptide region of the preprotein plays a role in SecYEG interactions is unclear, in part because studies in this area typically employ the entire preprotein. Using a synthetic signal peptide harboring a photoaffinity label in its hydrophobic core, we examined this interaction with SecYEG in a detergent micellar environment. The signal peptide was found to specifically bind SecY in a saturable manner and at levels comparable to those that stimulate SecA ATPase activity. Chemical and proteolytic cleavage of cross-linked SecY and analysis of the signal peptide adducts indicate that the binding was primarily to regions of the protein containing transmembrane domains seven and two. The signal peptide-SecY interaction was affected by the presence of SecA and nucleotides in a manner consistent with the transfer of signal peptide to SecY upon nucleotide hydrolysis at SecA.

Indexed as

Protein Sorting SignalsAdenosine TriphosphatasesAmino Acid SequenceBacterial ProteinsBiotinCross-Linking ReagentsEscherichia coli ProteinsHydrolysisMembrane Transport ProteinsMolecular Sequence DataPeptide FragmentsPhenylalaninePhotoaffinity LabelsProtein BindingProtein PrecursorsProtein TransportAdenosine TriphosphatasesBacterial ProteinsbenzoylphenylalanineBiotinCross-Linking ReagentsEscherichia coli ProteinsMembrane Transport ProteinsPeptide FragmentsPhenylalaninePhotoaffinity LabelsProtein PrecursorsProtein Sorting SignalsSecA ProteinsSEC Translocation ChannelsSecY protein, E coli

Identifiers

PMID15476412
PMCPMC3084660
OpenAlexW2080804581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.