Evidence map›Paper›PMID 15475587›Full record

ArticleBiophysical journal2005

Flash-induced oxygen evolution in photosynthesis: simple solution for the extended S-state model that includes misses, double-hits, inactivation, and backward-transitions.

Vladimir P Shinkarev

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Vladimir P ShinkarevDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA. vshinkar@uiuc.edu
University of Illinois Urbana-Champaign · US

Funding

Charge Transfer Reactions of the Cytochrome bc1 ComplexR01GM053508 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI WRAIGHT, COLIN A · 1996 to 2011
$2.4M
NIGMS NIH HHS GM 53508NIGMS NIH HHS R01 GM053508
6 · The paper itself

Abstract

Flash-induced oxygen evolution in higher plants, algae, and cyanobacteria exhibits damped period-four oscillations. To explain such oscillations, Kok suggested a simple phenomenological S-state model, in which damping is due to empirical misses and double-hits. Here we developed an analytical solution for the extended Kok model that includes misses, double-hits, inactivation, and backward-transitions. The solution of the classic Kok model (with misses and double-hits only) can be obtained as a particular case of this solution. Simple equations describing the flash-number dependence of individual S-states and oxygen evolution in both cases are almost identical and, therefore, the classic Kok model does not have a significant advantage in its simplicity over the extended version considered in this article. Developed equations significantly simplify the fitting of experimental data via standard nonlinear regression analysis and make unnecessary the use of many previously developed methods for finding parameters of the model. The extended Kok model considered here can provide additional insight into the effect of dark relaxation between flashes and inactivation.

Indexed as

AlgorithmsBiophysicsCyanobacteriaElectronsHydrazinesHydroxylamineLightModels, BiologicalModels, TheoreticalOscillometryOxygenPhotosynthesisPhotosystem II Protein ComplexQuinonesRegression AnalysishydrazineHydrazinesHydroxylamineOxygenPhotosystem II Protein ComplexQuinones

Identifiers

PMID15475587
PMCPMC1305018
OpenAlexW2094686934

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.