Evidence map›Paper›PMID 15470257›Full record

ArticleEukaryotic cell2004

FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.

Miguel Arévalo-Rodríguez, Xuewen Pan, Jef D Boeke, Joseph Heitman

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Miguel Arévalo-RodríguezDepartment of Molecular Genetics and Microbiology, Box 3546, 322 CARL Building, Research Dr., Duke University Medical Center, Durham, NC 27710, USA.
Xuewen Pan
Jef D Boeke
Joseph Heitman
High Throughput Biology (United States) · USHoward Hughes Medical Institute · US

Funding

YEAST GENETIC INTERACTION MAPR01HG002432 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2002 to 2008
$11.8M
Novel Antifungal Therapeutic ApproachesR01AI050438 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2001 to 2012
$3.3M
NHGRI NIH HHS R01 HG002432NIAID NIH HHS R01 AI050438NIAID NIH HHS R01 AI50438
6 · The paper itself

Abstract

FKBP12 is a conserved member of the prolyl-isomerase enzyme family and serves as the intracellular receptor for FK506 that mediates immunosuppression in mammals and antimicrobial actions in fungi. To investigate the cellular functions of FKBP12 in Saccharomyces cerevisiae, we employed a high-throughput assay to identify mutations that are synthetically lethal with a mutation in the FPR1 gene, which encodes FKBP12. This screen identified a mutation in the HOM6 gene, which encodes homoserine dehydrogenase, the enzyme catalyzing the last step in conversion of aspartic acid into homoserine, the common precursor in threonine and methionine synthesis. Lethality of fpr1 hom6 double mutants was suppressed by null mutations in HOM3 or HOM2, encoding aspartokinase and aspartate beta-semialdehyde dehydrogenase, respectively, supporting the hypothesis that fpr1 hom6 double mutants are inviable because of toxic accumulation of aspartate beta-semialdehyde, the substrate of homoserine dehydrogenase. Our findings also indicate that mutation or inhibition of FKBP12 dysregulates the homoserine synthetic pathway by perturbing aspartokinase feedback inhibition by threonine. Because this pathway is conserved in fungi but not in mammals, our findings suggest a facile route to synergistic antifungal drug development via concomitant inhibition of FKBP12 and Hom6.

Indexed as

Aspartate KinaseAspartate-Semialdehyde DehydrogenaseAspartic AcidBase SequenceDNA, FungalFeedbackGene DeletionGenes, FungalHomoserine DehydrogenaseMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTacrolimusTacrolimus Binding Protein 1AThreonineAspartate KinaseAspartate-Semialdehyde DehydrogenaseAspartic AcidDNA, FungalHomoserine DehydrogenaseSaccharomyces cerevisiae ProteinsTacrolimusTacrolimus Binding Protein 1AThreonine

Identifiers

PMID15470257
PMCPMC522611
OpenAlexW2145339329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.