Evidence map›Paper›PMID 15470254›Full record

ArticleEukaryotic cell2004

Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray.

Peter R Kraus, Marie-Josée Boily, Steven S Giles, Jason E Stajich, Andria Allen, Gary M Cox, Fred S Dietrich, John R Perfect, Joseph Heitman

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 110 citations in OpenAlex.

  1. Molecular remodelling ofJournal of medical microbiology · 2026
    Article
  2. Review
  3. Roles of Different Signaling Pathways inJournal of fungi (Basel, Switzerland) · 2024
    Review
  4. Importance of Clinical Isolates inJournal of fungi (Basel, Switzerland) · 2023
    Review
  5. Review
  6. Review
  7. Colony and Single Cell Level Analysis of the Heterogeneous Response ofFrontiers in cellular and infection microbiology · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
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  18. Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Peter R KrausDepartment of Molecular Genetics and Microbiology, 322 CARL Building, Box 3546, Research Dr., Duke University Medical Center, Durham, NC 27710, USA.
Marie-Josée Boily
Steven S Giles
Jason E Stajich
Andria Allen
Gary M Cox
Fred S Dietrich
John R Perfect
Joseph Heitman
Duke Medical Center · US

Funding

ROLE OF CALCINEURIN IN C. NEOFORMANS MATING AND FRUITINGR01AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 1997 to 2025
$6.7M
Genetics of Cryptococcus sexual reproductionR37AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2011 to 2020
$4.9M
SIGNAL TRANSDUCTION PATHWAYS REGULATING VIRULENCEP01AI044975 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 1999 to 2003
$3.4M
Novel Antifungal Therapeutic ApproachesR01AI050438 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2001 to 2012
$3.3M
GENOME ANALYSIS OF CRYPTOCOCCUS NEOFORMANSU01AI048594 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI FRASER-LIGGETT, CLAIRE M · 2001 to 2002
$2.9M
AN AIDS-RELATED CRYPTOCOCCUS NEOFORMANS GENOME CENTERU01AI047087 · NIAID · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2000 to 2002
$2.6M
Role of Calcineurin in Fungal VirulenceR01AI042159 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 1998 to 2009
$2.5M
Genetic analysis of Cryptococcus neoformans virulenceR01AI063443 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2005 to 2009
$2.0M
NIAID NIH HHS AI47087NIAID NIH HHS P01 AI044975NIAID NIH HHS P01-AI44975NIAID NIH HHS R01 AI039115NIAID NIH HHS R01 AI042159NIAID NIH HHS R01 AI050438NIAID NIH HHS R01 AI063443NIAID NIH HHS R01 AI39115NIAID NIH HHS R01 AI42159NIAID NIH HHS R01 AI50438NIAID NIH HHS R37 AI039115NIAID NIH HHS U01 AI48594PHS HHS A128388
6 · The paper itself

Abstract

The ability to survive and proliferate at 37 degrees C is an essential virulence attribute of pathogenic microorganisms. A partial-genome microarray was used to profile gene expression in the human-pathogenic fungus Cryptococcus neoformans during growth at 37 degrees C. Genes with orthologs involved in stress responses were induced during growth at 37 degrees C, suggesting that a conserved transcriptional program is used by C. neoformans to alter gene expression during stressful conditions. A gene encoding the transcription factor homolog Mga2 was induced at 37 degrees C and found to be important for high-temperature growth. Genes encoding fatty acid biosynthetic enzymes were identified as potential targets of Mga2, suggesting that membrane remodeling is an important component of adaptation to high growth temperatures. mga2Delta mutants were extremely sensitive to the ergosterol synthesis inhibitor fluconazole, indicating a coordination of the synthesis of membrane component precursors. Unexpectedly, genes involved in amino acid and pyrimidine biosynthesis were repressed at 37 degrees C, but components of these pathways were found to be required for high-temperature growth. Our findings demonstrate the utility of even partial-genome microarrays for delineating regulatory cascades that contribute to microbial pathogenesis.

Indexed as

Genes, FungalCryptococcus neoformansFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGenome, FungalHumansOligonucleotide Array Sequence AnalysisTemperatureTranscription FactorsVirulenceFungal ProteinsTranscription Factors

Identifiers

PMID15470254
PMCPMC522612
OpenAlexW2138507077

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.