Evidence map›Paper›PMID 15466710›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

The complete genomic sequence of Nocardia farcinica IFM 10152.

Jun Ishikawa, Atsushi Yamashita, Yuzuru Mikami, Yasutaka Hoshino, Haruyo Kurita, Kunimoto Hotta, Tadayoshi Shiba, Masahira Hattori

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed
31.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 286 citations in OpenAlex.

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  4. Isolation, Identification and Whole-Genome Sequencing of aAnimals : an open access journal from MDPI · 2026
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  10. Genomic and phenotypic characterization of antimicrobial resistance in clinicalFrontiers in cellular and infection microbiology · 2025
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  13. Infectious Diarrhea Caused byInfection and drug resistance · 2024
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  14. The NocardialMicroorganisms · 2023
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  15. Review
  16. Updated Review onClinical microbiology reviews · 2022
    Review
  17. Methods of IdentifyingPathogens (Basel, Switzerland) · 2022
    Review
  18. Immunoprotective Analysis of the NFA49590 Protein fromPathogens (Basel, Switzerland) · 2022
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  19. Article
  20. Genomic analysis ofFrontiers in microbiology · 2022
    Article

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jun IshikawaDepartment of Bioactive Molecules, National Institute of Infectious Diseases, Shinjuku, Tokyo 162-8640, Japan. jun@nih.go.jp
Atsushi Yamashita
Yuzuru Mikami
Yasutaka Hoshino
Haruyo Kurita
Kunimoto Hotta
Tadayoshi Shiba
Masahira Hattori
Chiba University · JPKitasato University · JPNational Institute of Infectious Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We determined the genomic sequence of Nocardia farcinica IFM 10152, a clinical isolate, and revealed the molecular basis of its versatility. The genome consists of a single circular chromosome of 6,021,225 bp with an average G+C content of 70.8% and two plasmids of 184,027 (pNF1) and 87,093 (pNF2) bp with average G+C contents of 67.2% and 68.4%, respectively. The chromosome encoded 5,674 putative protein-coding sequences, including many candidate genes for virulence and multidrug resistance as well as secondary metabolism. Analyses of paralogous protein families suggest that gene duplications have resulted in a bacterium that can survive not only in soil environments but also in animal tissues, resulting in disease.

Indexed as

Genome, BacterialAmino Acid SequenceChromosome MappingChromosomes, BacterialMolecular Sequence DataNocardiaRNA Polymerase IISequence AlignmentSequence Homology, Amino AcidRNA Polymerase II

Identifiers

PMID15466710
PMCPMC522048
OpenAlexW1980789643

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.