Evidence map›Paper›PMID 15466520›Full record

ArticleApplied and environmental microbiology2004

Identification of Lactococcus lactis genes required for bacteriophage adsorption.

Kitt Dupont, Thomas Janzen, Finn Kvist Vogensen, Jytte Josephsen, Birgitte Stuer-Lauridsen

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Members of theMicrobial genomics · 2026
    Article
  2. Inactivation of KhpB (EloR/Jag) inApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. PBP2b Mutations Improve the Growth of Phage-ResistantApplied and environmental microbiology · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Viruses · 2020
    Article
  14. Article
  15. Comparative Genome Analysis ofFrontiers in microbiology · 2019
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kitt DupontDepartment of Food Science, The Royal Veterinary and Agricultural University, Frederiksberg, Denmark.
Thomas Janzen
Finn Kvist Vogensen
Jytte Josephsen
Birgitte Stuer-Lauridsen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this work was to identify genes in Lactococcus lactis subsp. lactis IL1403 and Lactococcus lactis subsp. cremoris Wg2 important for adsorption of the 936-species phages bIL170 and phi 645, respectively. Random insertional mutagenesis of the two L. lactis strains was carried out with the vector pGh9:ISS1, and integrants that were resistant to phage infection and showed reduced phage adsorption were selected. In L. lactis IL1403 integration was obtained in the ycaG and rgpE genes, whereas in L. lactis Wg2 integration was obtained in two genes homologous to ycbC and ycbB of L. lactis IL1403. rgpE and ycbB encode putative glycosyltransferases, whereas ycaG and ycbC encode putative membrane-spanning proteins with unknown functions. Interestingly, ycaG, rgpE, ycbC, and ycbB are all part of the same operon in L. lactis IL1403. This operon is probably involved in biosynthesis and transport of cell wall polysaccharides (WPS). Binding and infection studies showed that phi645 binds to and infects L. lactis Wg2, L. lactis IL1403, and L. lactis IL1403 strains with pGh9:ISS1 integration in ycaG and rgpE, whereas bIL170 binds to and infects only L. lactis IL1403 and cannot infect Wg2. These results indicate that phi 645 binds to a WPS structure present in both L. lactis IL1403 and L. lactis Wg2, whereas bIL170 binds to another WPS structure not present in L. lactis Wg2. Binding of bIL170 and phi 645 to different WPS structures was supported by alignment of the receptor-binding proteins of bIL170 and phi 645 that showed no homology in the C-terminal part.

Indexed as

Genes, BacterialAdsorptionAmino Acid SequenceBacterial ProteinsBacteriophagesBase SequenceBinding SitesCell WallDNA, BacterialLactococcus lactisMolecular Sequence DataMutagenesis, InsertionalPolysaccharides, BacterialSequence Homology, Amino AcidTranscription, GeneticBacterial ProteinsDNA, BacterialPolysaccharides, Bacterial

Identifiers

PMID15466520
PMCPMC522090

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.