ArticlePlant physiology2004
Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice.
Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed, 75 citations in OpenAlex.
- The gene conferring susceptibility to spot blotch caused by Cochliobolus sativus is located at the Mla locus in barley cultivar Bowman.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Conservation and divergence of small RNA pathways and microRNAs in land plants.Genome biology · 2017Article
- The barley Frost resistance-H2 locus.Functional & integrative genomics · 2014Article
- The detection of QTLs in barley associated with endosperm hardness, grain density, grain size and malting quality using rapid phenotyping tools.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Identification and distribution of Puroindoline b-2 variant gene homologs in Hordeum.Genetica · 2013Article
- Towards positional isolation of three quantitative trait loci conferring resistance to powdery mildew in two Spanish barley landraces.PloS one · 2013Article
- New algorithm improves fine structure of the barley consensus SNP map.BMC genomics · 2011Article
- Chromosomal loci associated with endosperm hardness in a malting barley cross.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Tracing the evolution of the floral homeotic B- and C-function genes through genome synteny.Molecular biology and evolution · 2010Article
- A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block.BMC plant biology · 2010Article
- Promoters of the barley germin-like GER4 gene cluster enable strong transgene expression in response to pathogen attack.The Plant cell · 2010Article
- Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.).Genetics · 2009Article
- Structure-function analysis of the barley genome: the gene-rich region of chromosome 2HL.Functional & integrative genomics · 2009Article
- The 172-kb genomic DNA region of the O. rufipogon yld1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica.Functional & integrative genomics · 2009Article
- The determinants of grain texture in cereals.Journal of applied genetics · 2009Review
- Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats.BMC genomics · 2008Article
- Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species.Journal of molecular evolution · 2008Article
- Molecular genetics of puroindolines and related genes: allelic diversity in wheat and other grasses.Plant molecular biology · 2008Review
- TEnest: automated chronological annotation and visualization of nested plant transposable elements.Plant physiology · 2008Article
Corrections and comments
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Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The ancestral shared synteny concept has been advocated as an approach to positionally clone genes from complex genomes. However, the unified grass genome model and the study of grasses as a single syntenic genome is a topic of considerable controversy. Hence, more quantitative studies of cereal colinearity at the sequence level are required. This study compared a contiguous 300-kb sequence of the barley (Hordeum vulgare) genome with the colinear region in rice (Oryza sativa). The barley sequence harbors genes involved in endosperm texture, which may be the subject of distinctive evolutionary forces and is located at the extreme telomeric end of the short arm of chromosome 5H. Comparative sequence analysis revealed the presence of five orthologous genes and a complex, postspeciation evolutionary history involving small chromosomal rearrangements, a translocation, numerous gene duplications, and extensive transposon insertion. Discrepancies in gene content and microcolinearity indicate that caution should be exercised in the use of rice as a surrogate for map-based cloning of genes from large genome cereals such as barley.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.