Evidence map›Paper›PMID 15456522›Full record

ArticleBMC evolutionary biology2004

Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways.

Jibin Sun, Rolf Daniel, Irene Wagner-Döbler, An-Ping Zeng

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC evolutionary biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 271 citations in OpenAlex.

  1. AI-2 production inJournal of bacteriology · 2026
    Article
  2. Identification ofMicroorganisms · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Chemical Conversations.Molecules (Basel, Switzerland) · 2025
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Co-regulation of biofilm formation and antimicrobial resistance in Acinetobacter baumannii: from mechanisms to therapeutic strategies.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2023
    Review
  13. Autoinducer-2 promotes adherence ofApplied and environmental microbiology · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Frontiers in cellular and infection microbiology · 2023
    Article
  18. Intestinal colonization againstAIMS microbiology · 2023
    Review
  19. Regulation of biofilm formation inFrontiers in bioengineering and biotechnology · 2023
    Article
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jibin SunDepartment of Genome Analysis, GBF - German Research Center for Biotechnology, Braunschweig, Germany. jsu@gbf.de <jsu@gbf.de>
Rolf Daniel
Irene Wagner-Döbler
An-Ping Zeng
German Center for Infection Research · DEUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundQuorum sensing is a process of bacterial cell-to-cell communication involving the production and detection of extracellular signaling molecules called autoinducers. Recently, it has been proposed that autoinducer-2 (AI-2), a furanosyl borate diester derived from the recycling of S-adenosyl-homocysteine (SAH) to homocysteine, serves as a universal signal for interspecies communication.

resultsIn this study, 138 completed genomes were examined for the genes involved in the synthesis and detection of AI-2. Except for some symbionts and parasites, all organisms have a pathway to recycle SAH, either using a two-step enzymatic conversion by the Pfs and LuxS enzymes or a one-step conversion using SAH-hydrolase (SahH). 51 organisms including most Gamma-, Beta-, and Epsilonproteobacteria, and Firmicutes possess the Pfs-LuxS pathway, while Archaea, Eukarya, Alphaproteobacteria, Actinobacteria and Cyanobacteria prefer the SahH pathway. In all 138 organisms, only the three Vibrio strains had strong, bidirectional matches to the periplasmic AI-2 binding protein LuxP and the central signal relay protein LuxU. The initial two-component sensor kinase protein LuxQ, and the terminal response regulator luxO are found in most Proteobacteria, as well as in some Firmicutes, often in several copies.

conclusionsThe genomic analysis indicates that the LuxS enzyme required for AI-2 synthesis is widespread in bacteria, while the periplasmic binding protein LuxP is only present in Vibrio strains. Thus, other organisms may either use components different from the AI-2 signal transduction system of Vibrio strains to sense the signal of AI-2, or they do not have such a quorum sensing system at all.

Indexed as

GenomePhylogenyAdenosylhomocysteinaseAnimalsBacterial ProteinsCarbon-Sulfur LyasesDatabases, ProteinGenome, BacterialGenome, FungalGenome, HumanGenome, PlantHomocysteineHomoserineHumansLactonesMethionineAdenosylhomocysteinaseBacterial ProteinsCarbon-Sulfur LyasesHomocysteineHomoserineLactonesLuxS protein, BacteriaMethionineN-octanoylhomoserine lactone

Identifiers

PMID15456522
PMCPMC524169
OpenAlexW1548495754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.