Evidence map›Paper›PMID 15454553›Full record

ArticleGenetics2004

Radiation hybrid mapping of the species cytoplasm-specific (scsae) gene in wheat.

Khwaja G Hossain, Oscar Riera-Lizarazu, Venugopal Kalavacharla, M Isabel Vales, Schivcharan S Maan, Shahryar F Kianian

Abstract readComparative Study
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  5. Article
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  8. Physical mapping of chromosome 4J of Thinopyrum bessarabicum using gamma radiation-induced aberrations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  9. Article
  10. Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Khwaja G HossainDepartment of Plant Sciences, North Dakota State University, Fargo 58105, USA.
Oscar Riera-Lizarazu
Venugopal Kalavacharla
M Isabel Vales
Schivcharan S Maan
Shahryar F Kianian

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Radiation hybrid (RH) mapping is based on radiation-induced chromosome breakage and analysis of chromosome segment retention or loss using molecular markers. In durum wheat (Triticum turgidum L., AABB), an alloplasmic durum line [(lo) durum] has been identified with chromosome 1D of T. aestivum L. (AABBDD) carrying the species cytoplasm-specific (scsae) gene. The chromosome 1D of this line segregates as a whole without recombination, precluding the use of conventional genome mapping. A radiation hybrid mapping population was developed from a hemizygous (lo) scsae--line using 35 krad gamma rays. The analysis of 87 individuals of this population with 39 molecular markers mapped on chromosome 1D revealed 88 radiation-induced breaks in this chromosome. This number of chromosome 1D breaks is eight times higher than the number of previously identified breaks and should result in a 10-fold increase in mapping resolution compared to what was previously possible. The analysis of molecular marker retention in our radiation hybrid mapping panel allowed the localization of scsae and 8 linked markers on the long arm of chromosome 1D. This constitutes the first report of using RH mapping to localize a gene in wheat and illustrates that this approach is feasible in a species with a large complex genome.

Indexed as

Radiation Hybrid MappingChromosomes, PlantGamma RaysGenes, PlantGenetic MarkersPolymorphism, Restriction Fragment LengthSpecies SpecificityTriticumGenetic Markers

Identifiers

PMID15454553
PMCPMC1448084

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.