ArticleGenetics2004
Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas.
Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.
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Who cites it
57 citing papers in PubMed, 208 citations in OpenAlex.
- Mapping of QTLs and meta-QTLs for Heterodera avenae Woll. resistance in common wheat (Triticum aestivum L.).BMC plant biology · 2023Article
- Meta-QTLs, ortho-meta QTLs and related candidate genes for yield and its component traits under water stress in wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- The first high-density genetic map of common cockle (Cerastoderma edule) reveals a major QTL controlling shell color variation.Scientific reports · 2022Article
- Genetic Diversity and Genetic Differentiation of Populations of Golden-Backed Carp (Animals : an open access journal from MDPI · 2022Article
- Pooled resequencing of larvae and adults reveals genomic variations associated with Ostreid herpesvirus 1 resistance in the Pacific oysterFrontiers in immunology · 2022Article
- Article
- Overt and concealed genetic loads revealed by QTL mapping of genotype-dependent viability in the Pacific oyster Crassostrea gigas.Genetics · 2021Article
- Meta-QTLs, ortho-MQTLs and candidate genes for the traits contributing to salinity stress tolerance in common wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genomic analysis of ionome-related QTLs in Arabidopsis thaliana.Scientific reports · 2021Article
- High-Density Linkage Maps Based on Genotyping-by-Sequencing (GBS) Confirm a Chromosome-Level Genome Assembly and Reveal Variation in Recombination Rate for the Pacific OysterG3 (Bethesda, Md.) · 2020Article
- Heterologous microsatellite primers are informative for paca (Cuniculus paca), a large rodent with economic and ecological importance.BMC research notes · 2020Article
- Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oysterEvolutionary applications · 2020Article
- Article
- Comparative Transcriptome Analysis Reveals Molecular Basis Underlying Fast Growth of the Selectively Bred Pacific Oyster,Frontiers in genetics · 2019Article
- Mapping Genetic Loci for Quantitative Traits of Golden Shell Color, Mineral Element Contents, and Growth-Related Traits in Pacific Oyster (Crassostrea gigas).Marine biotechnology (New York, N.Y.) · 2018Article
- Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata.Genome biology and evolution · 2018Article
- Construction of a high-density genetic map and fine QTL mapping for growth and nutritional traits of Crassostrea gigas.BMC genomics · 2018Article
- A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters (G3 (Bethesda, Md.) · 2018Article
- Genomic Selection for Growth Traits in Pacific Oyster (Frontiers in genetics · 2018Article
- Construction of the First High-Density Genetic Linkage Map and Analysis of Quantitative Trait Loci for Growth-Related Traits in Sinonovacula constricta.Marine biotechnology (New York, N.Y.) · 2017Article
Corrections and comments
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Authors and funding
2 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We constructed male and female consensus linkage maps for the Pacific oyster Crassostrea gigas, using a total of 102 microsatellite DNA markers typed in 11-day-old larvae from three families. We identified 11 and 12 linkage groups in the male and female consensus maps, respectively. Alignment of these separate maps, however, suggests 10 linkage groups, which agrees with the haploid chromosome number. The male linkage map comprises 88 loci and spans 616.1 cM, while the female map comprises 86 loci and spans 770.5 cM. The male and the female maps share 74 loci; 2 markers remain unlinked. The estimated coverages for the consensus linkage maps are 79% for the male and 70-75% for the female, on the basis of two estimates of genome length. Ninety-five percent of the genome is expected to lie within 16 and 21 cM of markers on the male and female maps, respectively, while 95% of simulated minimum distances to the male and female maps are within 10.1 and 13.6 cM, respectively. Females have significantly more recombination than males, across 118 pairs of linked markers in common to the parents of the three families. Significant differences in recombination and orders of markers are also evident among same-sex parents of different families as well as sibling parents of opposite sex. These observations suggest that polymorphism for chromosomal rearrangements may exist in natural populations, which could have profound implications for interpreting the evolutionary genetics of the oyster. These are the first linkage maps for a bivalve mollusc that use microsatellite DNA markers, which should enable them to be transferred to other families and to be useful for further genetic analyses such as QTL mapping.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.