Evidence map›Paper›PMID 15452238›Full record

ArticleJournal of virology2004

Identification of proteins associated with murine cytomegalovirus virions.

Lisa M Kattenhorn, Ryan Mills, Markus Wagner, Alexandre Lomsadze, Vsevolod Makeev, Mark Borodovsky, Hidde L Ploegh, Benedikt M Kessler

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 148 citations in OpenAlex.

  1. An OralPathogens (Basel, Switzerland) · 2025
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Decoding murine cytomegalovirus.PLoS pathogens · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. MASS SPECTROMETRY IN VIROLOGICAL SCIENCES.Mass spectrometry reviews · 2020
    Review
  15. Article
  16. Mouse CytomegalovirusFrontiers in cellular and infection microbiology · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Annexins in Translational Research: Hidden Treasures to Be Found.International journal of molecular sciences · 2018
    Review

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Lisa M KattenhornPathology Functional Proteomics Center, Department of Pathology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.
Ryan Mills
Markus Wagner
Alexandre Lomsadze
Vsevolod Makeev
Mark Borodovsky
Hidde L Ploegh
Benedikt M Kessler
Harvard University · USGeorgia Institute of Technology · USGenetika · RU

Funding

PREDICTION OF GENE LOCATIONS USING STOCHASTIC MODELSR01HG000783 · NHGRI · GEORGIA INSTITUTE OF TECHNOLOGY · PI BORODOVSKY, MARK · 1993 to 2014
$4.7M
ASSEMBLY OF MHC CLASS I MOLECULES IN VITRO AND IN VIVOR37AI033456 · NIAID · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PLOEGH, HIDDE L · 1998 to 2007
$4.6M
ASSEMBLY OF MHC CLASS I MOLECULES IN VITRO AND IN VIVOR01AI033456 · NIAID · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PLOEGH, HIDDE L. · 1993 to 2012
$4.0M
Improving Accuracy of Gene Prediction Programs of the G*R03TW005899 · FIC · GEORGIA INSTITUTE OF TECHNOLOGY · PI BORODOVSKY, MARK · 2003 to 2004
$81k
FIC NIH HHS R03 TW005899FIC NIH HHS TW 005899NHGRI NIH HHS HG 00783NHGRI NIH HHS R01 HG000783NIAID NIH HHS AI 33456-05NIAID NIH HHS R01 AI033456NIAID NIH HHS R37 AI033456
6 · The paper itself

Abstract

Proteins associated with the murine cytomegalovirus (MCMV) viral particle were identified by a combined approach of proteomic and genomic methods. Purified MCMV virions were dissociated by complete denaturation and subjected to either separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and in-gel digestion or treated directly by in-solution tryptic digestion. Peptides were separated by nanoflow liquid chromatography and analyzed by tandem mass spectrometry (LC-MS/MS). The MS/MS spectra obtained were searched against a database of MCMV open reading frames (ORFs) predicted to be protein coding by an MCMV-specific version of the gene prediction algorithm GeneMarkS. We identified 38 proteins from the capsid, tegument, glycoprotein, replication, and immunomodulatory protein families, as well as 20 genes of unknown function. Observed irregularities in coding potential suggested possible sequence errors in the 3'-proximal ends of m20 and M31. These errors were experimentally confirmed by sequencing analysis. The MS data further indicated the presence of peptides derived from the unannotated ORFs ORF(c225441-226898) (m166.5) and ORF(105932-106072). Immunoblot experiments confirmed expression of m166.5 during viral infection.

Indexed as

Open Reading FramesProteomeAmino Acid SequenceAnimalsChromatography, LiquidElectrophoresis, Polyacrylamide GelMass SpectrometryMiceMice, Inbred C57BLMolecular Sequence DataMuromegalovirusSequence Analysis, DNAViral ProteinsVirionProteomeViral Proteins

Identifiers

PMID15452238
PMCPMC521832
OpenAlexW2095778156

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.