Evidence map›Paper›PMID 15452237›Full record

ArticleJournal of virology2004

Clonal selection for transcriptionally active viral oncogenes during progression to cancer.

Brian A Van Tine, John C Kappes, N Sanjib Banerjee, Judith Knops, Lilin Lai, Renske D M Steenbergen, Chris L J M Meijer, Peter J F Snijders, Pamela Chatis, Thomas R Broker and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Viruses in colorectal cancer.Molecular oncology · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Vorinostat, a pan-HDAC inhibitor, abrogates productive HPV-18 DNA amplification.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Brian A Van TineDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, 1918 University Blvd., McCallum Bldg., Rm. 510, Birmingham, AL 35294-0005, USA.
John C Kappes
N Sanjib Banerjee
Judith Knops
Lilin Lai
Renske D M Steenbergen
Chris L J M Meijer
Peter J F Snijders
Pamela Chatis
Thomas R Broker
Phillip T Moen
Louise T Chow
Vrije Universiteit Amsterdam · NLBeth Israel Deaconess Medical Center · USUniversity of Alabama at Birmingham · US

Funding

HUMAN PAPILLOMAVIRUS GENE EXPRESSIONR01CA036200 · NCI · UNIVERSITY OF ROCHESTER · PI BROKER, THOMAS R · 1985 to 2003
$1.4M
NCI NIH HHS CA 32600NCI NIH HHS R01 CA036200
6 · The paper itself

Abstract

Primary keratinocytes immortalized by human papillomaviruses (HPVs), along with HPV-induced cervical carcinoma cell lines, are excellent models for investigating neoplastic progression to cancer. By simultaneously visualizing viral DNA and nascent viral transcripts in interphase nuclei, we demonstrated for the first time a selection for a single dominant papillomavirus transcription center or domain (PVTD) independent of integrated viral DNA copy numbers or loci. The PVTD did not associate with several known subnuclear addresses but was almost always perinucleolar. Silent copies of the viral genome were activated by growth in the DNA methylation inhibitor 5-azacytidine. HPV-immortalized keratinocytes supertransduced with HPV oncogenes and selected for marker gene coexpression underwent crisis, and the surviving cells transcribed only the newly introduced genes. Thus, transcriptional selection in response to environmental changes is a dynamic process to achieve optimal gene expression for cell survival. This phenomenon may be critical in clonal selection during carcinogenesis. Examination of HPV-associated cancers supports this hypothesis.

Indexed as

Cell Transformation, NeoplasticGene Expression Regulation, ViralSelection, GeneticTranscription, GeneticCell Line, TransformedCell NucleolusDNA, ViralHumansIn Situ Hybridization, FluorescenceKeratinocytesOncogene Proteins, ViralPapillomaviridaeRNA, ViralTyramineVirus IntegrationDNA, ViralOncogene Proteins, ViralRNA, ViralTyramine

Identifiers

PMID15452237
PMCPMC521852
OpenAlexW2097999551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.