ArticleOecologia2005
A proteomic fingerprint of dissolved organic carbon and of soil particles.
Article in Oecologia, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
29 citing papers in PubMed, 160 citations in OpenAlex.
- Assessment of functional trait variation in arid-zone plant families to evaluate indicator species for rehabilitation of degraded landscapes.Die Naturwissenschaften · 2026Article
- Extraction of active, contaminant degrading enzymes from soil.Applied soil ecology : a section of Agriculture, Ecosystems & Environment · 2023Article
- Soil Metaproteomics for the Study of the Relationships Between Microorganisms and Plants: A Review of Extraction Protocols and Ecological Insights.International journal of molecular sciences · 2020Review
- Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass.Journal of proteome research · 2018Article
- Soil metaproteomics reveals an inter-kingdom stress response to the presence of black truffles.Scientific reports · 2016Article
- Identification of Putative Mek1 Substrates during Meiosis in Saccharomyces cerevisiae Using Quantitative Phosphoproteomics.PloS one · 2016Article
- Article
- The Significance of Microbe-Mineral-Biomarker Interactions in the Detection of Life on Mars and Beyond.Astrobiology · 2015Article
- The molecular composition of dissolved organic matter in forest soils as a function of pH and temperature.PloS one · 2015Article
- Biota and biomolecules in extreme environments on Earth: implications for life detection on Mars.Life (Basel, Switzerland) · 2014Review
- The Role of Mass Spectrometry in the "Omics" Era.Current organic chemistry · 2013Article
- Soil metaproteomics - Comparative evaluation of protein extraction protocols.Soil biology & biochemistry · 2012Article
- Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions.The ISME journal · 2012Article
- Environmental proteomics, biodiversity statistics and food-web structure.Trends in ecology & evolution · 2012Article
- Exploring mixed microbial community functioning: recent advances in metaproteomics.FEMS microbiology ecology · 2012Review
- Identifying and tracking proteins through the marine water column: insights into the inputs and preservation mechanisms of protein in sediments.Geochimica et cosmochimica acta · 2012Article
- A road map for the development of community systems (CoSy) biology.Nature reviews. Microbiology · 2012Review
- Metagenomic analyses: past and future trends.Applied and environmental microbiology · 2011Review
- Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil.PloS one · 2010Article
- Microbial protein in soil: influence of extraction method and C amendment on extraction and recovery.Microbial ecology · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Mass spectrometry-based proteomics was applied to analyze proteins isolated from dissolved organic matter (DOM). The focal question was to identify the type and biological origin of proteins in DOM, and to describe diversity of protein origin at the level of higher taxonomic units, as well as to detect extracellular enzymes possibly important in the carbon cycle. Identified proteins were classified according to their phylogenetic origin and metabolic function using the National Center for Biotechnology Information (NCBI) protein and taxonomy database. Seventy-eight percent of the proteins in DOM from the lake but less than 50% in forest soil DOM originated from bacteria. In a deciduous forest, the number of identified proteins decreased from 75 to 28 with increasing soil depth and decreasing total soil organic carbon content. The number of identified proteins and taxonomic groups was 50% higher in winter than in summer. In spruce forest, number of proteins and taxonomic groups decreased by 50% on a plot where trees had been girdled a year before and carbohydrate transport to roots was terminated. After girdling, proteins from four taxonomic groups remained as compared to nine taxonomic groups in healthy forest. Enzymes involved in degradation of organic matter were not identified in free soil DOM. However, cellulases and laccases were found among proteins extracted from soil particles, indicating that degradation of soil organic matter takes place in biofilms on particle surfaces. These results demonstrate a novel application of proteomics to obtain a "proteomic fingerprint" of presence and activity of organisms in an ecosystem.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.