Evidence map›Paper›PMID 15447792›Full record

ArticleBMC medical genetics2004

Characterization of a new full length TMPRSS3 isoform and identification of mutant alleles responsible for nonsyndromic recessive deafness in Newfoundland and Pakistan.

Zubair M Ahmed, Xiaoyan Cindy Li, Shontell D Powell, Saima Riazuddin, Terry-Lynn Young, Khushnooda Ramzan, Zahoor Ahmad, Sandra Luscombe, Kiran Dhillon, Linda MacLaren and 7 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. A frameshift mutation ofFrontiers in pediatrics · 2022
    Article
  6. Article
  7. Article
  8. Novel Mutations and Mutation Combinations ofBioMed research international · 2017
    Article
  9. Identification ofNeural plasticity · 2017
    Article
  10. Article
  11. Article
  12. TMPRSS3 mutations in autosomal recessive nonsyndromic hearing loss.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2016
    Article
  13. Review
  14. Article
  15. Article
  16. Article
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  18. Genotype-phenotype correlation in DFNB8/10 families with TMPRSS3 mutations.Journal of the Association for Research in Otolaryngology : JARO · 2011
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 3 countries.

Zubair M AhmedSection on Human Genetics, Laboratory of Molecular Genetics, National Institute on Deafness and Other Communication Disorders, National Institutes of Health, Rockville, MD, USA. ahmedz@nidcd.nih.gov
Xiaoyan Cindy Li
Shontell D Powell
Saima Riazuddin
Terry-Lynn Young
Khushnooda Ramzan
Zahoor Ahmad
Sandra Luscombe
Kiran Dhillon
Linda MacLaren
Barbara Ploplis
Lawrence I Shotland
Elizabeth Ives
Sheikh Riazuddin
Thomas B Friedman
Robert J Morell
Edward R Wilcox
National Institute on Deafness and Other Communication Disorders · USNational Institutes of Health · USMemorial University of Newfoundland · CAUniversity of the Punjab · PKAlberta Children's Hospital · CACentre of Excellence in Molecular Biology · PKHouse Clinic · USUniversity of Washington · US

Funding

Identification of Genes Causing Syndromic And Nonsyndromic Hearing ImpairmentZ01DC000039 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS BAER · 1997 to 2008
$7.2M
RESEARCH TRAINING IN THE LANGUAGE SCIENCEST32DC000035 · NIDCD · UNIVERSITY OF ROCHESTER · PI TANENHAUS, MICHAEL KEHAS · 1992 to 2013
$4.9M
MAPPING AND CLONING HEREDITARY HEARING IMPAIRMENT GENESZ01DC000035 · NIDCD · DEAFNESS &OTHER COMMUNICATION DISORDERS · PI WILCOX, EDWARD R. · 1997 to 2002
–
Intramural NIH HHS Z01 DC000039NIDCD NIH HHS T32 DC000035NIDCD NIH HHS Z01DC00035-06NIDCD NIH HHS Z01DC00039-06
6 · The paper itself

Abstract

backgroundMutant alleles of TMPRSS3 are associated with nonsyndromic recessive deafness (DFNB8/B10). TMPRSS3 encodes a predicted secreted serine protease, although the deduced amino acid sequence has no signal peptide. In this study, we searched for mutant alleles of TMPRSS3 in families from Pakistan and Newfoundland with recessive deafness co-segregating with DFNB8/B10 linked haplotypes and also more thoroughly characterized the genomic structure of TMPRSS3.

methodsWe enrolled families segregating recessive hearing loss from Pakistan and Newfoundland. Microsatellite markers flanking the TMPRSS3 locus were used for linkage analysis. DNA samples from participating individuals were sequenced for TMPRSS3. The structure of TMPRSS3 was characterized bioinformatically and experimentally by sequencing novel cDNA clones of TMPRSS3.

resultsWe identified mutations in TMPRSS3 in four Pakistani families with recessive, nonsyndromic congenital deafness. We also identified two recessive mutations, one of which is novel, of TMPRSS3 segregating in a six-generation extended family from Newfoundland. The spectrum of TMPRSS3 mutations is reviewed in the context of a genotype-phenotype correlation. Our study also revealed a longer isoform of TMPRSS3 with a hitherto unidentified exon encoding a signal peptide, which is expressed in several tissues.

conclusionMutations of TMPRSS3 contribute to hearing loss in many communities worldwide and account for 1.8% (8 of 449) of Pakistani families segregating congenital deafness as an autosomal recessive trait. The newly identified TMPRSS3 isoform e will be helpful in the functional characterization of the full length protein.

Indexed as

AllelesMutationAmino Acid SequenceBase SequenceDeafnessFemaleGenes, RecessiveHumansMaleMembrane ProteinsMolecular Sequence DataNeoplasm ProteinsNewfoundland and LabradorPakistanPedigreeProtein IsoformsMembrane ProteinsNeoplasm ProteinsProtein IsoformsSerine EndopeptidasesTMPRSS3 protein, human

Identifiers

PMID15447792
PMCPMC523852
OpenAlexW1509071637

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.