Evidence map›Paper›PMID 15388857›Full record

ArticleProtein science : a publication of the Protein Society2004

Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome.

Timothy A Hinsley, Pamela Cunliffe, Hannah J Tipney, Andrew Brass, May Tassabehji

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Williams syndrome.Nature reviews. Disease primers · 2021
    Review
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  12. Review
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  15. Review
  16. Article
  17. Essential functions of the Williams-Beuren syndrome-associated TFII-I genes in embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  18. Identification of the TFII-I family target genes in the vertebrate genome.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Timothy A HinsleyAcademic Department of Medical Genetics, St. Mary's Hospital, Hathersage Road, Manchester, M13 0JH, UK.
Pamela Cunliffe
Hannah J Tipney
Andrew Brass
May Tassabehji
St. Mary's Hospital · GBUniversity of Manchester · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Williams-Beuren syndrome (WBS) is a neurological disorder resulting from a microdeletion, typically 1.5 megabases in size, at 7q11.23. Atypical patients implicate genes at the telomeric end of this multigene deletion as the main candidates for the pathology of WBS in particular the unequal cognitive profile associated with the condition. We recently identified a gene (GTF2IRD2) that shares homology with other members of a unique family of transcription factors (TFII-I family), which reside in the critical telomeric region. Using bioinformatics tools this study focuses on the detailed assessment of this gene family, concentrating on their characteristic structural components such as the leucine zipper (LZ) and I-repeat elements, in an attempt to identify features that could aid functional predictions. Phylogenetic analysis identified distinct I-repeat clades shared between family members. Linking functional data to one such clade has implicated them in DNA binding. The identification of PEST, synergy control motifs, and sumoylation sites common to all family members suggest a shared mechanism regulating the stability and transcriptional activity of these factors. In addition, the identification/isolation of short truncated isoforms for each TFII-I family member implies a mode of self-regulation. The exceptionally high identity shared between GTF2I and GTF2IRD2, suggests that heterodimers as well as homodimers are possible, and indicates overlapping functions between their respective short isoforms. Such cross-reactivity between GTF2I and GTF2IRD2 short isoforms might have been the evolutionary driving force for the 7q11.23 chromosomal rearrangement not present in the syntenic region in mice.

Indexed as

Gene DeletionAmino Acid MotifsAmino Acid SequenceChromosomes, Human, Pair 7Computational BiologyExonsHumansLeucine ZippersMolecular Sequence DataMuscle ProteinsNuclear ProteinsPhylogenyProtein IsoformsSequence AlignmentSequence Homology, Amino AcidTrans-ActivatorsGTF2I protein, humanGTF2IRD1 protein, humanGTF2IRD2 protein, humanMuscle ProteinsNuclear ProteinsProtein IsoformsTrans-ActivatorsTranscription Factors, TFIITranscription Factors, TFIII

Identifiers

PMID15388857
PMCPMC2286546
OpenAlexW2097577285

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.