Evidence map›Paper›PMID 15378005›Full record

ArticleOncogene2004

Allelic imbalance of APAF-1 locus at 12q23 is related to progression of colorectal carcinoma.

Naoyuki Umetani, Akihide Fujimoto, Hiroya Takeuchi, Masaru Shinozaki, Anton J Bilchik, Dave S B Hoon

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 35 citations in OpenAlex.

  1. Predictive utility of circulating methylated DNA in serum of melanoma patients receiving biochemotherapy.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2005
    Trial
  2. Article
  3. Review
  4. Review
  5. DNA methylation of apoptosis genes in rectal cancer predicts patient survival and tumor recurrence.Apoptosis : an international journal on programmed cell death · 2014
    Article
  6. Evading apoptosis in cancer.Trends in cell biology · 2013
    Review
  7. Article
  8. Article
  9. Article
  10. Epigenetic contributions to cancer metastasis.Clinical & experimental metastasis · 2009
    Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Naoyuki UmetaniDepartment of Molecular Oncology, John Wayne Cancer Institute, Saint Johns Health Science Center, Santa Monica, CA 90404, USA.
Akihide Fujimoto
Hiroya Takeuchi
Masaru Shinozaki
Anton J Bilchik
Dave S B Hoon
Saint John's Health Center · USMolecular Oncology (United States) · US

Funding

SURGICAL ONCOLOGY WITH COMBINATION THERMO-CHEMOTHERAPYP01CA029605 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI COCHRAN, ALISTAIR JOHN · 1985 to 2013
$75.2M
NCI NIH HHS P0 CA29605
6 · The paper itself

Abstract

APAF-1 gene, located at chromosome locus 12q23, is a key factor in the mitochondrial apoptotic pathway downstream of p53, and is a potential tumor suppressor gene. We hypothesized that APAF-1 gene dysfunction due to allelic imbalance (AI) contributes to the development and progression of colorectal carcinoma (CRC). AI at APAF-1 locus and microsatellite instability (MIN) in CRCs and adenomas were assessed by multiple microsatellite markers. The frequency of AI significantly increased with tumor progression; 0 of 33 (0%) adenomas, 14 of 49 (29%) primary CRCs, and 18 of 34 (53%) liver metastases had AI. A total of 12 metastases were matched with corresponding primary CRCs; in 11 of 12 (92%) pairs, the metastasis had same AI status as the corresponding primary tumor. APAF-1 mRNA transcription level was significantly decreased with AI in liver metastases (P=0.009). Promoter hypermethylation was found in three of 35 (9%) primary CRCs and one of 15 (7%) liver metastases by methylation-specific PCR but was not correlated with AI. MIN was observed in 11 of 49 (23%) primary CRCs and was a favorable prognostic factor. Our results suggest that APAF-1 gene haploinsufficiency caused by AI increases with tumor progression, and relates to hepatic metastasis.

Indexed as

AllelesChromosomes, Human, Pair 12Apoptotic Protease-Activating Factor 1Chromosome MappingColorectal NeoplasmsDisease ProgressionDNA MethylationHumansLiver NeoplasmsMicrosatellite RepeatsPromoter Regions, GeneticProteinsRNA, MessengerAPAF1 protein, humanApoptotic Protease-Activating Factor 1ProteinsRNA, Messenger

Identifiers

PMID15378005
OpenAlexW1997922627

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.