ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004
Genetic diversity and phylogeny of Japanese sake-brewing rice as revealed by AFLP and nuclear and chloroplast SSR markers.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Population Dynamics of Wide Compatibility System and Evaluation of Intersubspecific Hybrids byPlants (Basel, Switzerland) · 2022Article
- Unravelling genetic architecture and development of core set from elite rice lines using yield-related candidate gene markers.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
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- Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.Nature genetics · 2016Article
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- Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.PloS one · 2014Article
- Population structure in Japanese rice population.Breeding science · 2013Article
- Extensive microsatellite variation in rice induced by introgression from wild rice (Zizania latifolia Griseb.).PloS one · 2013Article
- Genetic structure of Thai rice and rice accessions obtained from the International Rice Research Institute.Rice (New York, N.Y.) · 2012Article
- Physical and genetic mapping of amplified fragment length polymorphisms and the leaf rust resistance Lr3 gene on chromosome 6BL of wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
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Authors and funding
8 authors.
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Abstract
Japanese rice ( Oryza sativa L.) cultivars that are strictly used for the brewing of sake (Japanese rice wine) represent a unique and traditional group. These cultivars are characterized by common traits such as large grain size with low protein content and a large, central white-core structure. To understand the genetic diversity and phylogenetic characteristics of sake-brewing rice, we performed amplified fragment length polymorphism and simple sequence repeat analyses, using 95 cultivars of local and modern sake-brewing rice together with 76 cultivars of local and modern cooking rice. Our analysis of both nuclear and chloroplast genome polymorphisms showed that the genetic diversity in sake-brewing rice cultivars was much smaller than the diversity found in cooking rice cultivars. Interestingly, the genetic diversity within the modern sake-brewing cultivars was about twofold higher than the diversity within the local sake-brewing cultivars, which was in contrast to the cooking cultivars. This is most likely due to introgression of the modern cooking cultivars into the modern sake-brewing cultivars through breeding practices. Cluster analysis and chloroplast haplotype analysis suggested that the local sake-brewing cultivars originated monophyletically in the western regions of Japan. Analysis of variance tests showed that several markers were significantly associated with sake-brewing traits, particularly with the large white-core structure.
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