Evidence map›Paper›PMID 15371553›Full record

ArticleNucleic acids research2004

An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene.

Hui Zhao, Ann Dean

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

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  16. Article
  17. Enhancer and promoter interactions-long distance calls.Current opinion in genetics & development · 2012
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Hui ZhaoLaboratory of Cellular and Developmental Biology, NIDDK, NIH, Bethesda, MD 20892, USA.
Ann Dean

Funding

Chromatin Structure In Regulation Of Mammalian Gene ExpressionZIADK015508 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DEAN, ANN · 2009 to 2017
$7.3M
CHROMATIN STRUCTURE IN REGULATION OF MAMMALIAN GENE EXPRESSIONZ01DK015508 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DEAN, ANN · 1988 to 2008
$1000k
6 · The paper itself

Abstract

We studied the mechanism by which an insulator interrupts enhancer signaling to a gene using stably replicated chromatin templates containing the human beta-globin locus control region HS2 enhancer and a target globin gene. The chicken beta-globin 5' HS4 (cHS4) insulator acted as a positional enhancer blocker, inhibiting promoter remodeling and transcription activation only when placed between the enhancer and gene. Enhancer blocking by cHS4 reduced histone hyperacetylation across a zone extending from the enhancer to the gene and inhibited recruitment of CBP and p300 to HS2. Enhancer blocking also led to accumulation of RNA polymerase II at HS2 and within cHS4, accompanied by its diminution at the gene promoter. The enhancer blocking effects were completely attributable to the CTCF binding site in cHS4. These findings provide experimental evidence for the involvement of spreading in establishment of a broad zone of histone modification by an enhancer, as well as for blocking by an insulator of the transfer of RNA polymerase II from an enhancer to a promoter.

Indexed as

Enhancer Elements, GeneticGene Expression RegulationInsulator ElementsAcetylationAcetyltransferasesAnimalsCCCTC-Binding FactorChickensChromatinCREB-Binding ProteinDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGlobinsHistonesHumansK562 CellsAcetyltransferasesCCCTC-Binding FactorChromatinCREB-Binding ProteinCREBBP protein, humanCTCF protein, humanDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGlobinsHistonesNuclear ProteinsRepressor ProteinsRNA Polymerase IITrans-ActivatorsTranscription Factors

Identifiers

PMID15371553
PMCPMC519119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.