Evidence map›Paper›PMID 15367670›Full record

ArticleMolecular and cellular biology2004

Characterization of karyopherin cargoes reveals unique mechanisms of Kap121p-mediated nuclear import.

Deena M Leslie, Wenzhu Zhang, Benjamin L Timney, Brian T Chait, Michael P Rout, Richard W Wozniak, John D Aitchison

Erratum issuedAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors.

Deena M LeslieInstitute for Systems Biology, Seattle, Washington 98103, USA.
Wenzhu Zhang
Benjamin L Timney
Brian T Chait
Michael P Rout
Richard W Wozniak
John D Aitchison

Funding

Virtual Gating Machines for Protein PurificationR01GM071329 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2004 to 2013
$4.6M
NIGMS NIH HHS R01 GM071329
6 · The paper itself

Abstract

In yeast there are at least 14 members of the beta-karyopherin protein family that govern the movement of a diverse set of cargoes between the nucleus and cytoplasm. Knowledge of the cargoes carried by each karyopherin and insight into the mechanisms of transport are fundamental to understanding constitutive and regulated transport and elucidating how they impact normal cellular functions. Here, we have focused on the identification of nuclear import cargoes for the essential yeast beta-karyopherin, Kap121p. Using an overlay blot assay and coimmunopurification studies, we have identified 30 putative Kap121p cargoes. Among these were Nop1p and Sof1p, two essential trans-acting protein factors required at the early stages of ribosome biogenesis. Characterization of the Kap121p-Nop1p and Kap121p-Sof1p interactions demonstrated that, in addition to lysine-rich nuclear localization signals (NLSs), Kap121p recognizes a unique class of signals distinguished by the abundance of arginine and glycine residues and consequently termed rg-NLSs. Kap104p is also known to recognize rg-NLSs, and here we show that it compensates for the loss of Kap121p function. Sof1p is also transported by Kap121p; however, its import can be mediated by a piggyback mechanism with Nop1p bridging the interaction between Sof1p and Kap121p. Together, our data elucidate additional levels of complexity in these nuclear transport pathways.

Indexed as

Amino Acid Sequencebeta KaryopherinsCell NucleusKaryopherinsMolecular Sequence DataNuclear Localization SignalsNuclear ProteinsNucleoplasminsPhosphoproteinsProtein Interaction MappingProteinsProtein TransportRibonucleoproteins, Small NuclearRibonucleoproteins, Small NucleolarSaccharomyces cerevisiae ProteinsYeastsbeta KaryopherinsKAP104 protein, S cerevisiaeKaryopherinsNOP1 protein, S cerevisiaeNuclear Localization SignalsNuclear ProteinsNucleoplasminsPhosphoproteinsProteinsRibonucleoproteins, Small NuclearRibonucleoproteins, Small NucleolarSaccharomyces cerevisiae ProteinsSOF1 protein, S cerevisiae

Identifiers

PMID15367670
PMCPMC516728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.