Evidence map›Paper›PMID 15367627›Full record

ArticleJournal of virology2004

SF2/ASF binds the human papillomavirus type 16 late RNA control element and is regulated during differentiation of virus-infected epithelial cells.

Maria G McPhillips, Thanaporn Veerapraditsin, Sarah A Cumming, Dimitra Karali, Steven G Milligan, Winifred Boner, Iain M Morgan, Sheila V Graham

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 73 citations in OpenAlex.

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  10. Splicing and Polyadenylation of Human Papillomavirus Type 16 mRNAs.International journal of molecular sciences · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Maria G McPhillipsInstitute of Biomedical and Life Sciences, Division of Virology, University of Glasgow, Church Street, Glasgow G11 5JR, Scotland, United Kingdom.
Thanaporn Veerapraditsin
Sarah A Cumming
Dimitra Karali
Steven G Milligan
Winifred Boner
Iain M Morgan
Sheila V Graham
University of Veterinary Medicine · HUUniversity of Glasgow · GB

Funding

Wellcome Trust 064140
6 · The paper itself

Abstract

Pre-mRNA splicing occurs in the spliceosome, which is composed of small ribonucleoprotein particles (snRNPs) and many non-snRNP components. SR proteins, so called because of their C-terminal arginine- and serine-rich domains (RS domains), are essential members of this class. Recruitment of snRNPs to 5' and 3' splice sites is mediated and promoted by SR proteins. SR proteins also bridge splicing factors across exons to help to define these units and have a central role in alternative and enhancer-dependent splicing. Here, we show that the SR protein SF2/ASF is part of a complex that forms upon the 79-nucleotide negative regulatory element (NRE) that is thought to be pivotal in posttranscriptional regulation of late gene expression in human papillomavirus type 16 (HPV-16). However, the NRE does not contain any active splice sites, is located in the viral late 3' untranslated region, and regulates RNA-processing events other than splicing. The level of expression and extent of phosphorylation of SF2/ASF are upregulated with epithelial differentiation, as is subcellular distribution, specifically in HPV-16-infected epithelial cells, and expression levels are controlled, at least in part, by the virus transcription regulator E2.

Indexed as

Gene Expression Regulation, ViralRegulatory Sequences, Nucleic Acid3' Untranslated RegionsCell DifferentiationCell LineCell NucleusCytoplasmDNA-Binding ProteinsEpithelial CellsHumansNuclear ProteinsOncogene Proteins, ViralPapillomaviridaePhosphorylationProtein BindingRibonucleoproteins3' Untranslated RegionsDNA-Binding ProteinsE2 protein, Human papillomavirus type 16Nuclear ProteinsOncogene Proteins, ViralRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, ViralSerine-Arginine Splicing FactorsSplicing Factor U2AFU2AF2 protein, human

Identifiers

PMID15367627
PMCPMC516382
OpenAlexW2159308373

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.