Evidence map›Paper›PMID 15367608›Full record

ArticleJournal of virology2004

Integration of clinical data, pathology, and cDNA microarrays in influenza virus-infected pigtailed macaques (Macaca nemestrina).

Carole R Baskin, Adolfo García-Sastre, Terrence M Tumpey, Helle Bielefeldt-Ohmann, Victoria S Carter, Estanislao Nistal-Villán, Michael G Katze

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it, 95 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Dynamic Natural Killer Cell and T Cell Responses to Influenza Infection.Frontiers in cellular and infection microbiology · 2020
    Review
  10. Article
  11. Nonhuman primate models of human viral infections.Nature reviews. Immunology · 2018
    Review
  12. Article
  13. Genetic Characterization of a Captive Colony of Pigtailed Macaques (Journal of the American Association for Laboratory Animal Science : JAALAS · 2017
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Carole R BaskinDepartment of Comparative Medicine, University of Washington School of Medicine, Box 358070, Seattle, WA 98195, USA. cb2@u.washington.edu
Adolfo García-Sastre
Terrence M Tumpey
Helle Bielefeldt-Ohmann
Victoria S Carter
Estanislao Nistal-Villán
Michael G Katze
Icahn School of Medicine at Mount Sinai · USUniversity of Washington · USCenters for Disease Control and Prevention · US

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI CHAMBERLAIN, JEFFREY S · 1985 to 2011
$161.1M
DEVELOPMENT OF A PRIMATE GENOMICS RESOURCER24RR016354 · NCRR · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 2002 to 2011
$9.7M
VIRUS INDUCED DC MATURATION AND CELLULAR IMMUNITYP01AI048204 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI PALESE, PETER · 2000 to 2003
$3.8M
NCRR NIH HHS P51 RR000166NCRR NIH HHS P51RR00166NCRR NIH HHS R24 RR016354NCRR NIH HHS R24 RR16354NIAID NIH HHS P01 AI048204NIAID NIH HHS P01 AI48204
6 · The paper itself

Abstract

For most severe viral pandemics such as influenza and AIDS, the exact contribution of individual viral genes to pathogenicity is still largely unknown. A necessary step toward that understanding is a systematic comparison of different influenza virus strains at the level of transcriptional regulation in the host as a whole and interpretation of these complex genetic changes in the context of multifactorial clinical outcomes and pathology. We conducted a study by infecting pigtailed macaques (Macaca nemestrina) with a genetically reconstructed strain of human influenza H1N1 A/Texas/36/91 virus and hypothesized not only that these animals would respond to the virus similarly to humans, but that gene expression patterns in the lungs and tracheobronchial lymph nodes would fit into a coherent and complete picture of the host-virus interactions during infection. The disease observed in infected macaques simulated uncomplicated influenza in humans. Clinical signs and an antibody response appeared with induction of interferon and B-cell activation pathways, respectively. Transcriptional activation of inflammatory cells and apoptotic pathways coincided with gross and histopathological signs of inflammation, with tissue damage and concurrent signs of repair. Additionally, cDNA microarrays offered new evidence of the importance of cytotoxic T cells and natural killer cells throughout infection. With this experiment, we confirmed the suitability of the nonhuman primate model in the quest for understanding the individual and joint contributions of viral genes to influenza virus pathogenesis by using cDNA microarray technology and a reverse genetics approach.

Indexed as

Disease Models, AnimalGene Expression ProfilingMacaca nemestrinaAnimalsAntigen PresentationApoptosisB-LymphocytesFemaleImmunity, InnateInflammationInfluenza A virusInterferonsKiller Cells, NaturalLungLymph NodesLymphocyte ActivationInterferonsRNA, Messenger

Identifiers

PMID15367608
PMCPMC516400
OpenAlexW2002194487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.