Evidence map›Paper›PMID 15364884›Full record

ArticleClinical chemistry2005

Protein chip array profiling analysis in patients with severe acute respiratory syndrome identified serum amyloid a protein as a biomarker potentially useful in monitoring the extent of pneumonia.

Timothy T C Yip, Johnny W M Chan, William C S Cho, Tai-Tung Yip, Zheng Wang, Ting-Lok Kwan, Stephen C K Law, Dominic N C Tsang, John K C Chan, King-Chung Lee and 9 more

Abstract read
In one paragraph

Article in Clinical chemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. IL-6 and SAA-Strong Predictors for the Outcome in COVID-19 CKD Patients.International journal of molecular sciences · 2023
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  9. COVID19 biomarkers: What did we learn from systematic reviews?Frontiers in cellular and infection microbiology · 2022
    Review
  10. Article
  11. Review
  12. Role of Polypeptide Inflammatory Biomarkers in the Diagnosis and Monitoring of COVID-19.International journal of peptide research and therapeutics · 2022
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Timothy T C YipDepartment of Clinical Oncology, Queen Elizabeth Hospital, Hong Kong Special Administrative Region, The People's Republic of China.
Johnny W M Chan
William C S Cho
Tai-Tung Yip
Zheng Wang
Ting-Lok Kwan
Stephen C K Law
Dominic N C Tsang
John K C Chan
King-Chung Lee
Wai-Wai Cheng
Victor W S Ma
Christine Yip
Cadmon K P Lim
Roger K C Ngan
Joseph S K Au
Angel Chan
Wilina W L Lim
Ciphergen SARS Proteomics Study Group

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA new strain of coronavirus (CoV) has caused an outbreak of severe acute respiratory syndrome (SARS), with 8098 individuals being infected and 774 deaths worldwide. We carried out protein chip array profiling analysis in an attempt to identify biomarkers that might be useful in monitoring the clinical course of SARS patients.

methodsWe performed surface-enhanced laser desorption ionization time-of-flight mass spectrometry on 89 sera collected from 28 SARS patients, 72 sera from 51 control patients with various viral or bacterial infections, and 10 sera from apparently healthy individuals.

resultsNine significantly increased and three significantly decreased serum biomarkers were discovered in the SARS patients compared with the controls. Among these biomarkers, one (11,695 Da) was identified to be serum amyloid A (SAA) protein by peptide mapping and tandem mass spectrometric analysis. When we monitored the SAA concentrations longitudinally in 45 sera from four SARS patients, we found a good correlation of SAA concentration with the extent of pneumonia as assessed by a serial chest x-ray opacity score. Increased SAA occurred in three of four patients at the time of extensive pneumonia as indicated by high x-ray scores. Over the course of gradual recovery in two patients, as assessed clinically and radiologically, SAA concentrations gradually decreased. In the third patient, the concentrations were initially increased, but were further increased with superimposed multiple bacterial infections. SAA was not markedly increased in the fourth patient, who had low x-ray scores and whose clinical course was relatively mild.

conclusionsProtein chip array profiling analysis could be potentially useful in monitoring the severity of disease in SARS patients.

Indexed as

BiomarkersBlood Specimen CollectionFemaleFollow-Up StudiesHumansLongitudinal StudiesMaleMonitoring, PhysiologicPeptide MappingPneumonia, ViralProtein Array AnalysisProteomicsReproducibility of ResultsSerum Amyloid A ProteinSevere Acute Respiratory SyndromeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkersSerum Amyloid A Protein

Identifiers

PMID15364884
PMCPMC7108187

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.